Hb_005020_010

Information

Type -
Description -
Location Contig5020: 8800-10229
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005020_010 0.0 - - -
2 Hb_007177_010 0.0632002355 - - -
3 Hb_000971_060 0.1118670796 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000201_020 0.1118709953 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
5 Hb_001545_250 0.1118761855 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
6 Hb_001403_030 0.1120073571 - - -
7 Hb_010760_010 0.1123644712 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_070247_010 0.1130500981 - - hypothetical protein [Pseudomonas tolaasii]
9 Hb_020818_010 0.1132909679 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
10 Hb_000450_140 0.1136984926 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
11 Hb_012286_070 0.1137161861 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
12 Hb_000572_050 0.1187781837 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
13 Hb_005841_030 0.1217776938 - - -
14 Hb_005142_010 0.123525831 - - -
15 Hb_008839_030 0.1462010149 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004785_010 0.1477337586 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_000174_190 0.150410796 - - unnamed protein product [Coffea canephora]
18 Hb_076908_010 0.1508875505 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_083493_050 0.1512325409 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
20 Hb_149358_010 0.1521493702 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_005020_010 Hb_005020_010 Hb_007177_010 Hb_007177_010 Hb_005020_010--Hb_007177_010 Hb_000971_060 Hb_000971_060 Hb_005020_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_005020_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_005020_010--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_005020_010--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_005020_010--Hb_010760_010 Hb_000572_050 Hb_000572_050 Hb_007177_010--Hb_000572_050 Hb_007177_010--Hb_001403_030 Hb_007177_010--Hb_000971_060 Hb_007177_010--Hb_000201_020 Hb_007177_010--Hb_001545_250 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_001403_030 Hb_000971_060--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_000971_060--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_001403_030 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_001403_030 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010 Hb_001403_030--Hb_010760_010 Hb_001403_030--Hb_070247_010 Hb_001403_030--Hb_020818_010 Hb_010760_010--Hb_070247_010 Hb_010760_010--Hb_020818_010 Hb_000450_140 Hb_000450_140 Hb_010760_010--Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_010760_010--Hb_012286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035171 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.25295 0.129924 0

CAGE analysis