Hb_000201_020

Information

Type -
Description -
Location Contig201: 21848-28306
Sequence    

Annotation

kegg
ID cic:CICLE_v10024145mg
description hypothetical protein
nr
ID XP_006442737.1
description hypothetical protein CICLE_v10024145mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TRA9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024145mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_020 0.0 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
2 Hb_001545_250 0.0004033004 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
3 Hb_000971_060 0.0020879318 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001403_030 0.0069565971 - - -
5 Hb_010760_010 0.0094047547 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_070247_010 0.0151822702 - - hypothetical protein [Pseudomonas tolaasii]
7 Hb_020818_010 0.0167842678 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_000450_140 0.0192177479 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
9 Hb_012286_070 0.0193170716 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_000572_050 0.0414270377 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
11 Hb_005841_030 0.0496649384 - - -
12 Hb_005142_010 0.0539532726 - - -
13 Hb_008839_030 0.095727053 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004785_010 0.0959185131 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000174_190 0.0999997121 - - unnamed protein product [Coffea canephora]
16 Hb_076908_010 0.1007169021 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_083493_050 0.1012341546 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
18 Hb_149358_010 0.1026019265 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_060455_010 0.1047835994 - - 50 kDa protein [Hevea brasiliensis]
20 Hb_001110_020 0.104827157 - - hypothetical protein JCGZ_03693 [Jatropha curcas]

Gene co-expression network

sample Hb_000201_020 Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_000201_020--Hb_001545_250 Hb_000971_060 Hb_000971_060 Hb_000201_020--Hb_000971_060 Hb_001403_030 Hb_001403_030 Hb_000201_020--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000201_020--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_000201_020--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_000971_060 Hb_001545_250--Hb_001403_030 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010 Hb_000971_060--Hb_001403_030 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_001403_030--Hb_010760_010 Hb_001403_030--Hb_070247_010 Hb_001403_030--Hb_020818_010 Hb_010760_010--Hb_070247_010 Hb_010760_010--Hb_020818_010 Hb_000450_140 Hb_000450_140 Hb_010760_010--Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_010760_010--Hb_012286_070 Hb_070247_010--Hb_020818_010 Hb_070247_010--Hb_000450_140 Hb_070247_010--Hb_012286_070 Hb_020818_010--Hb_000450_140 Hb_020818_010--Hb_012286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0644867 0.00675493 0

CAGE analysis