Hb_000450_140

Information

Type -
Description -
Location Contig450: 134393-134575
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06810g
description POPTRDRAFT_557757; hypothetical protein
nr
ID XP_002314029.1
description hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
swissprot
ID Q8S2W4
description Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2
trembl
ID B9HNM7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06810g PE=4 SV=1
Gene Ontology
ID GO:0005886
description arabinogalactan peptide 23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_140 0.0 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
2 Hb_012286_070 9.93796e-05 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
3 Hb_020818_010 0.0024346775 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
4 Hb_070247_010 0.004037281 - - hypothetical protein [Pseudomonas tolaasii]
5 Hb_010760_010 0.009815749 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_001545_250 0.0188146793 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
7 Hb_000201_020 0.0192177479 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
8 Hb_000971_060 0.0213043125 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001403_030 0.0261686791 - - -
10 Hb_000572_050 0.0605593811 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
11 Hb_005841_030 0.0687638694 - - -
12 Hb_005142_010 0.0730323623 - - -
13 Hb_004785_010 0.076878913 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000174_190 0.0809757217 - - unnamed protein product [Coffea canephora]
15 Hb_076908_010 0.0816957054 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_083493_050 0.0822149823 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
17 Hb_149358_010 0.0835881441 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_001110_020 0.0858222577 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
19 Hb_139388_010 0.0863482452 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
20 Hb_000351_030 0.0866624278 - - putative NBS-LRR type disease resistance protein [Prunus persica]

Gene co-expression network

sample Hb_000450_140 Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_000450_140--Hb_012286_070 Hb_020818_010 Hb_020818_010 Hb_000450_140--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_000450_140--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_000450_140--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_000450_140--Hb_001545_250 Hb_000201_020 Hb_000201_020 Hb_000450_140--Hb_000201_020 Hb_012286_070--Hb_020818_010 Hb_012286_070--Hb_070247_010 Hb_012286_070--Hb_010760_010 Hb_012286_070--Hb_001545_250 Hb_012286_070--Hb_000201_020 Hb_020818_010--Hb_070247_010 Hb_020818_010--Hb_010760_010 Hb_020818_010--Hb_001545_250 Hb_020818_010--Hb_000201_020 Hb_070247_010--Hb_010760_010 Hb_070247_010--Hb_001545_250 Hb_070247_010--Hb_000201_020 Hb_010760_010--Hb_001545_250 Hb_010760_010--Hb_000201_020 Hb_001545_250--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_001545_250--Hb_000971_060 Hb_001403_030 Hb_001403_030 Hb_001545_250--Hb_001403_030 Hb_000201_020--Hb_000971_060 Hb_000201_020--Hb_001403_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 13.7419 1.67225 0

CAGE analysis