Hb_000226_100

Information

Type -
Description -
Location Contig226: 137802-139996
Sequence    

Annotation

kegg
ID rcu:RCOM_0667020
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002533669.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID Q96323
description Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1
trembl
ID B9T600
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0667020 PE=3 SV=1
Gene Ontology
ID GO:0008168
description codeine o-demethylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23493: 138147-139964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000226_100 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_000440_030 0.2308991362 - - 50 kDa protein [Hevea brasiliensis]
3 Hb_000264_220 0.2385066075 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
4 Hb_000705_280 0.2422426079 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
5 Hb_001943_020 0.2506600211 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
6 Hb_000184_200 0.2509901203 - - -
7 Hb_007975_040 0.2517591363 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
8 Hb_154340_010 0.2611856303 - - truncated nitrate transporter [Fragaria vesca]
9 Hb_000083_040 0.2643320429 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006280_010 0.2700014994 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
11 Hb_006355_050 0.2715054902 - - -
12 Hb_000009_070 0.2753094882 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
13 Hb_074238_010 0.2831947859 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
14 Hb_024247_020 0.2837540232 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
15 Hb_000638_040 0.2908131548 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
16 Hb_002078_170 0.2911032327 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
17 Hb_000141_240 0.2919879157 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
18 Hb_029866_030 0.2923336331 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
19 Hb_000964_060 0.2941664317 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
20 Hb_088538_020 0.297316374 - - hypothetical protein JCGZ_12178 [Jatropha curcas]

Gene co-expression network

sample Hb_000226_100 Hb_000226_100 Hb_000440_030 Hb_000440_030 Hb_000226_100--Hb_000440_030 Hb_000264_220 Hb_000264_220 Hb_000226_100--Hb_000264_220 Hb_000705_280 Hb_000705_280 Hb_000226_100--Hb_000705_280 Hb_001943_020 Hb_001943_020 Hb_000226_100--Hb_001943_020 Hb_000184_200 Hb_000184_200 Hb_000226_100--Hb_000184_200 Hb_007975_040 Hb_007975_040 Hb_000226_100--Hb_007975_040 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_000440_030--Hb_007975_040 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_024247_020 Hb_024247_020 Hb_000264_220--Hb_024247_020 Hb_011356_020 Hb_011356_020 Hb_000264_220--Hb_011356_020 Hb_000781_050 Hb_000781_050 Hb_000264_220--Hb_000781_050 Hb_002498_130 Hb_002498_130 Hb_000264_220--Hb_002498_130 Hb_001789_170 Hb_001789_170 Hb_000264_220--Hb_001789_170 Hb_152362_010 Hb_152362_010 Hb_000264_220--Hb_152362_010 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_183672_010 Hb_183672_010 Hb_001943_020--Hb_183672_010 Hb_001943_020--Hb_000440_030 Hb_001943_020--Hb_000705_280 Hb_000190_240 Hb_000190_240 Hb_001943_020--Hb_000190_240 Hb_002078_170 Hb_002078_170 Hb_001943_020--Hb_002078_170 Hb_002513_050 Hb_002513_050 Hb_000184_200--Hb_002513_050 Hb_000201_020 Hb_000201_020 Hb_000184_200--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_000184_200--Hb_000971_060 Hb_001545_250 Hb_001545_250 Hb_000184_200--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000184_200--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000184_200--Hb_010760_010 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_000120_690 Hb_000120_690 Hb_007975_040--Hb_000120_690 Hb_007975_040--Hb_004316_090 Hb_007975_040--Hb_074238_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129467 0 0.687143 0.414964 0.0162209 0.192114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184627 0.145239 7.86558 0.24402 0.181108

CAGE analysis