Hb_183672_010

Information

Type -
Description -
Location Contig183672: 383-2298
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07840g
description POPTRDRAFT_565803; hypothetical protein
nr
ID XP_012069891.1
description PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
swissprot
ID P31049
description Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1
trembl
ID B9HSS1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07840g PE=4 SV=2
Gene Ontology
ID GO:0008825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183672_010 0.0 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
2 Hb_000190_240 0.1939341647 - - unnamed protein product [Coffea canephora]
3 Hb_001943_020 0.1976652832 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
4 Hb_001235_080 0.2353860861 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000440_030 0.2447528954 - - 50 kDa protein [Hevea brasiliensis]
6 Hb_005599_060 0.2497426498 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
7 Hb_002078_170 0.279354747 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
8 Hb_000705_280 0.2950368877 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
9 Hb_000226_100 0.3029471835 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
10 Hb_007975_040 0.304804655 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
11 Hb_152362_010 0.3142870664 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
12 Hb_025311_020 0.3344166312 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
13 Hb_004316_090 0.3344788492 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
14 Hb_000264_220 0.3419406366 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
15 Hb_004934_080 0.3515006939 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
16 Hb_074238_010 0.355914811 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
17 Hb_000120_690 0.3603413918 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
18 Hb_001310_090 0.3609524072 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
19 Hb_006280_010 0.3648840372 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
20 Hb_003058_250 0.3659856972 - - hypothetical protein RCOM_0006440 [Ricinus communis]

Gene co-expression network

sample Hb_183672_010 Hb_183672_010 Hb_000190_240 Hb_000190_240 Hb_183672_010--Hb_000190_240 Hb_001943_020 Hb_001943_020 Hb_183672_010--Hb_001943_020 Hb_001235_080 Hb_001235_080 Hb_183672_010--Hb_001235_080 Hb_000440_030 Hb_000440_030 Hb_183672_010--Hb_000440_030 Hb_005599_060 Hb_005599_060 Hb_183672_010--Hb_005599_060 Hb_002078_170 Hb_002078_170 Hb_183672_010--Hb_002078_170 Hb_025311_020 Hb_025311_020 Hb_000190_240--Hb_025311_020 Hb_000190_240--Hb_001943_020 Hb_000190_240--Hb_000440_030 Hb_000190_240--Hb_005599_060 Hb_006280_010 Hb_006280_010 Hb_000190_240--Hb_006280_010 Hb_000226_100 Hb_000226_100 Hb_001943_020--Hb_000226_100 Hb_001943_020--Hb_000440_030 Hb_000705_280 Hb_000705_280 Hb_001943_020--Hb_000705_280 Hb_001943_020--Hb_002078_170 Hb_042211_010 Hb_042211_010 Hb_001235_080--Hb_042211_010 Hb_004316_090 Hb_004316_090 Hb_001235_080--Hb_004316_090 Hb_001235_080--Hb_000440_030 Hb_005396_160 Hb_005396_160 Hb_001235_080--Hb_005396_160 Hb_001235_080--Hb_000705_280 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_005599_060--Hb_002078_170 Hb_001310_090 Hb_001310_090 Hb_005599_060--Hb_001310_090 Hb_000032_450 Hb_000032_450 Hb_005599_060--Hb_000032_450 Hb_001287_010 Hb_001287_010 Hb_005599_060--Hb_001287_010 Hb_002078_170--Hb_001287_010 Hb_002150_060 Hb_002150_060 Hb_002078_170--Hb_002150_060 Hb_006153_080 Hb_006153_080 Hb_002078_170--Hb_006153_080 Hb_002078_170--Hb_001310_090 Hb_001486_010 Hb_001486_010 Hb_002078_170--Hb_001486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.489233 0.0490138 0.22582 0.76898 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.38418 0.0436813 0.196558

CAGE analysis