Hb_001235_080

Information

Type -
Description -
Location Contig1235: 145731-147117
Sequence    

Annotation

kegg
ID rcu:RCOM_1061410
description hypothetical protein
nr
ID XP_002528935.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_183672_010 0.2353860861 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
3 Hb_042211_010 0.2471693683 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
4 Hb_004316_090 0.249665058 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
5 Hb_000440_030 0.2650412809 - - 50 kDa protein [Hevea brasiliensis]
6 Hb_005396_160 0.2688072585 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
7 Hb_000705_280 0.2773639995 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
8 Hb_012725_080 0.2798938751 - - -
9 Hb_001318_090 0.2805431595 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
10 Hb_074238_010 0.2945567686 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
11 Hb_006355_050 0.2951051614 - - -
12 Hb_007975_040 0.2967758339 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
13 Hb_000083_040 0.3001384224 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001943_020 0.3140416439 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
15 Hb_052983_010 0.3145462435 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_004757_030 0.3225726413 - - -
17 Hb_005078_030 0.3234686874 - - -
18 Hb_000638_040 0.3275579254 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
19 Hb_000190_240 0.3282730006 - - unnamed protein product [Coffea canephora]
20 Hb_000120_690 0.3313081146 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_080 Hb_001235_080 Hb_183672_010 Hb_183672_010 Hb_001235_080--Hb_183672_010 Hb_042211_010 Hb_042211_010 Hb_001235_080--Hb_042211_010 Hb_004316_090 Hb_004316_090 Hb_001235_080--Hb_004316_090 Hb_000440_030 Hb_000440_030 Hb_001235_080--Hb_000440_030 Hb_005396_160 Hb_005396_160 Hb_001235_080--Hb_005396_160 Hb_000705_280 Hb_000705_280 Hb_001235_080--Hb_000705_280 Hb_000190_240 Hb_000190_240 Hb_183672_010--Hb_000190_240 Hb_001943_020 Hb_001943_020 Hb_183672_010--Hb_001943_020 Hb_183672_010--Hb_000440_030 Hb_005599_060 Hb_005599_060 Hb_183672_010--Hb_005599_060 Hb_002078_170 Hb_002078_170 Hb_183672_010--Hb_002078_170 Hb_042211_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_042211_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_042211_010--Hb_001318_090 Hb_052983_010 Hb_052983_010 Hb_042211_010--Hb_052983_010 Hb_004757_030 Hb_004757_030 Hb_042211_010--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_042211_010--Hb_005078_030 Hb_004316_090--Hb_000440_030 Hb_000638_040 Hb_000638_040 Hb_004316_090--Hb_000638_040 Hb_000120_690 Hb_000120_690 Hb_004316_090--Hb_000120_690 Hb_000264_220 Hb_000264_220 Hb_004316_090--Hb_000264_220 Hb_004316_090--Hb_000705_280 Hb_007975_040 Hb_007975_040 Hb_004316_090--Hb_007975_040 Hb_000440_030--Hb_000705_280 Hb_000440_030--Hb_000638_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_005396_160--Hb_012725_080 Hb_005396_160--Hb_001318_090 Hb_005396_160--Hb_004757_030 Hb_005396_160--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_005396_160--Hb_002357_050 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0344976 0 0 0.0338747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.223715 0 0

CAGE analysis