Hb_074238_010

Information

Type -
Description -
Location Contig74238: 32-1168
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FJB0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074238_010 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_000083_040 0.1758649609 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006355_050 0.2082528215 - - -
4 Hb_154340_010 0.2167246371 - - truncated nitrate transporter [Fragaria vesca]
5 Hb_000638_040 0.2287769897 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
6 Hb_000705_280 0.2365114018 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
7 Hb_000440_030 0.2394754928 - - 50 kDa protein [Hevea brasiliensis]
8 Hb_007975_040 0.2415338654 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
9 Hb_007177_010 0.2452139183 - - -
10 Hb_000141_240 0.2500727222 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
11 Hb_000964_060 0.2534379681 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
12 Hb_000009_070 0.2571846559 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
13 Hb_061637_010 0.2615427591 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_005020_010 0.2668926942 - - -
15 Hb_004316_090 0.2756968653 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
16 Hb_005142_010 0.2827552739 - - -
17 Hb_000226_100 0.2831947859 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
18 Hb_005841_030 0.2832052927 - - -
19 Hb_000572_050 0.2842306809 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
20 Hb_010417_010 0.2848838739 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_074238_010 Hb_074238_010 Hb_000083_040 Hb_000083_040 Hb_074238_010--Hb_000083_040 Hb_006355_050 Hb_006355_050 Hb_074238_010--Hb_006355_050 Hb_154340_010 Hb_154340_010 Hb_074238_010--Hb_154340_010 Hb_000638_040 Hb_000638_040 Hb_074238_010--Hb_000638_040 Hb_000705_280 Hb_000705_280 Hb_074238_010--Hb_000705_280 Hb_000440_030 Hb_000440_030 Hb_074238_010--Hb_000440_030 Hb_000083_040--Hb_006355_050 Hb_007177_010 Hb_007177_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_000083_040--Hb_154340_010 Hb_000083_040--Hb_000705_280 Hb_006355_050--Hb_000705_280 Hb_006355_050--Hb_007177_010 Hb_006355_050--Hb_000638_040 Hb_061637_010 Hb_061637_010 Hb_006355_050--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_006355_050--Hb_021156_030 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_154340_010--Hb_000572_050 Hb_000638_040--Hb_005142_010 Hb_000638_040--Hb_005841_030 Hb_000638_040--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_000638_040--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000638_040--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000638_040--Hb_000201_020 Hb_000705_280--Hb_000440_030 Hb_000705_280--Hb_000638_040 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447878 0 0 0.0938394 0.0420769 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0817881 1.42611 0.0671648 0

CAGE analysis