Hb_008839_030

Information

Type -
Description -
Location Contig8839: 19194-20606
Sequence    

Annotation

kegg
ID rcu:RCOM_0398770
description hypothetical protein
nr
ID XP_002532695.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T376
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0398770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008839_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_060455_010 0.0215261581 - - 50 kDa protein [Hevea brasiliensis]
3 Hb_005142_010 0.0674590321 - - -
4 Hb_005841_030 0.0686142835 - - -
5 Hb_000572_050 0.0715024862 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
6 Hb_001403_030 0.0908346815 - - -
7 Hb_000971_060 0.0942335022 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000201_020 0.095727053 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
9 Hb_001545_250 0.0960178895 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
10 Hb_010760_010 0.1026899261 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_070247_010 0.1071343609 - - hypothetical protein [Pseudomonas tolaasii]
12 Hb_020818_010 0.1083864397 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
13 Hb_000450_140 0.1103035695 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
14 Hb_012286_070 0.110382195 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
15 Hb_007177_010 0.1414955048 - - -
16 Hb_005020_010 0.1462010149 - - -
17 Hb_000638_040 0.151195665 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
18 Hb_061637_010 0.1617561304 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_000038_190 0.1754624356 - - -
20 Hb_000046_150 0.1754624356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008839_030 Hb_008839_030 Hb_060455_010 Hb_060455_010 Hb_008839_030--Hb_060455_010 Hb_005142_010 Hb_005142_010 Hb_008839_030--Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_008839_030--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_008839_030--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_008839_030--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_008839_030--Hb_000971_060 Hb_060455_010--Hb_005142_010 Hb_060455_010--Hb_005841_030 Hb_060455_010--Hb_000572_050 Hb_060455_010--Hb_001403_030 Hb_060455_010--Hb_000971_060 Hb_005142_010--Hb_005841_030 Hb_005142_010--Hb_000572_050 Hb_005142_010--Hb_001403_030 Hb_005142_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_005142_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_005142_010--Hb_001545_250 Hb_005841_030--Hb_000572_050 Hb_005841_030--Hb_001403_030 Hb_005841_030--Hb_000971_060 Hb_005841_030--Hb_000201_020 Hb_005841_030--Hb_001545_250 Hb_000572_050--Hb_001403_030 Hb_000572_050--Hb_000971_060 Hb_000572_050--Hb_000201_020 Hb_000572_050--Hb_001545_250 Hb_001403_030--Hb_000971_060 Hb_001403_030--Hb_000201_020 Hb_001403_030--Hb_001545_250 Hb_010760_010 Hb_010760_010 Hb_001403_030--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001403_030--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001403_030--Hb_020818_010 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 31.0602 1.70774 0.282741

CAGE analysis