Hb_007975_040

Information

Type -
Description -
Location Contig7975: 72059-78028
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01570g
description POPTRDRAFT_758413; hypothetical protein
nr
ID XP_010276078.1
description PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID B9H1B7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01570g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007975_040 0.0 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
2 Hb_000440_030 0.2165166054 - - 50 kDa protein [Hevea brasiliensis]
3 Hb_154340_010 0.2172504123 - - truncated nitrate transporter [Fragaria vesca]
4 Hb_000120_690 0.2310032083 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_004316_090 0.2374886414 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
6 Hb_074238_010 0.2415338654 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
7 Hb_000226_100 0.2517591363 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_000638_040 0.2598458444 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
9 Hb_000083_040 0.2683807786 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000705_280 0.2689102456 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
11 Hb_000141_240 0.2779559568 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
12 Hb_006355_050 0.2884168155 - - -
13 Hb_000264_220 0.2912130399 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
14 Hb_000964_060 0.2953681547 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
15 Hb_001235_080 0.2967758339 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001235_090 0.3015792029 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
17 Hb_183672_010 0.304804655 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
18 Hb_011249_040 0.3067435228 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
19 Hb_001943_020 0.3079126679 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
20 Hb_088538_020 0.3116594777 - - hypothetical protein JCGZ_12178 [Jatropha curcas]

Gene co-expression network

sample Hb_007975_040 Hb_007975_040 Hb_000440_030 Hb_000440_030 Hb_007975_040--Hb_000440_030 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_000120_690 Hb_000120_690 Hb_007975_040--Hb_000120_690 Hb_004316_090 Hb_004316_090 Hb_007975_040--Hb_004316_090 Hb_074238_010 Hb_074238_010 Hb_007975_040--Hb_074238_010 Hb_000226_100 Hb_000226_100 Hb_007975_040--Hb_000226_100 Hb_000705_280 Hb_000705_280 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_000440_030--Hb_004316_090 Hb_000440_030--Hb_000226_100 Hb_000440_030--Hb_074238_010 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_154340_010--Hb_000572_050 Hb_000083_040 Hb_000083_040 Hb_154340_010--Hb_000083_040 Hb_001235_090 Hb_001235_090 Hb_000120_690--Hb_001235_090 Hb_000120_690--Hb_004316_090 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_176472_010 Hb_176472_010 Hb_000120_690--Hb_176472_010 Hb_004316_090--Hb_000638_040 Hb_000264_220 Hb_000264_220 Hb_004316_090--Hb_000264_220 Hb_004316_090--Hb_000705_280 Hb_074238_010--Hb_000083_040 Hb_006355_050 Hb_006355_050 Hb_074238_010--Hb_006355_050 Hb_074238_010--Hb_154340_010 Hb_074238_010--Hb_000638_040 Hb_074238_010--Hb_000705_280 Hb_000226_100--Hb_000264_220 Hb_000226_100--Hb_000705_280 Hb_001943_020 Hb_001943_020 Hb_000226_100--Hb_001943_020 Hb_000184_200 Hb_000184_200 Hb_000226_100--Hb_000184_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0218312 0.0656787 0.0172836 0.195354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0499913 0.0393184 1.66572 0.0316151 0

CAGE analysis