Hb_176472_010

Information

Type -
Description -
Location Contig176472: 391-1051
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDY33419.1
description BnaC01g33060D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078H7F3
description BnaC01g33060D protein OS=Brassica napus GN=BnaC01g33060D PE=4 SV=1
Gene Ontology
ID GO:0016020
description extended synaptotagmin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176472_010 0.0 - - BnaC01g33060D [Brassica napus]
2 Hb_117807_030 0.1166398416 - - Protein MCM10 [Gossypium arboreum]
3 Hb_001235_090 0.2014172718 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
4 Hb_034905_010 0.2056587916 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
5 Hb_000545_160 0.2587723387 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
6 Hb_000120_690 0.2662013729 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
7 Hb_036537_010 0.2676745723 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000733_150 0.2916335991 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
9 Hb_002793_080 0.2954257403 - - ribonuclease t2, putative [Ricinus communis]
10 Hb_051055_010 0.3166966709 - - -
11 Hb_006907_090 0.3229579338 - - -
12 Hb_000191_010 0.3287638144 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000398_050 0.3501414505 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
14 Hb_020712_050 0.3664878622 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
15 Hb_003058_250 0.3722809308 - - hypothetical protein RCOM_0006440 [Ricinus communis]
16 Hb_007975_040 0.3859395647 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
17 Hb_015475_010 0.3939037792 - - hypothetical protein VITISV_034342 [Vitis vinifera]
18 Hb_004316_090 0.3960071741 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
19 Hb_001894_180 0.403285498 - - galactinol synthase [Manihot esculenta]
20 Hb_001060_080 0.4049815393 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_176472_010 Hb_176472_010 Hb_117807_030 Hb_117807_030 Hb_176472_010--Hb_117807_030 Hb_001235_090 Hb_001235_090 Hb_176472_010--Hb_001235_090 Hb_034905_010 Hb_034905_010 Hb_176472_010--Hb_034905_010 Hb_000545_160 Hb_000545_160 Hb_176472_010--Hb_000545_160 Hb_000120_690 Hb_000120_690 Hb_176472_010--Hb_000120_690 Hb_036537_010 Hb_036537_010 Hb_176472_010--Hb_036537_010 Hb_117807_030--Hb_001235_090 Hb_117807_030--Hb_034905_010 Hb_000191_010 Hb_000191_010 Hb_117807_030--Hb_000191_010 Hb_117807_030--Hb_000545_160 Hb_117807_030--Hb_000120_690 Hb_001235_090--Hb_000545_160 Hb_001235_090--Hb_000120_690 Hb_006907_090 Hb_006907_090 Hb_001235_090--Hb_006907_090 Hb_007975_040 Hb_007975_040 Hb_001235_090--Hb_007975_040 Hb_002793_080 Hb_002793_080 Hb_034905_010--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_034905_010--Hb_000733_150 Hb_000042_180 Hb_000042_180 Hb_034905_010--Hb_000042_180 Hb_168319_020 Hb_168319_020 Hb_034905_010--Hb_168319_020 Hb_000545_160--Hb_000191_010 Hb_000545_160--Hb_000120_690 Hb_000398_050 Hb_000398_050 Hb_000545_160--Hb_000398_050 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_036537_010--Hb_000733_150 Hb_036537_010--Hb_002793_080 Hb_051055_010 Hb_051055_010 Hb_036537_010--Hb_051055_010 Hb_036537_010--Hb_004316_090 Hb_020712_050 Hb_020712_050 Hb_036537_010--Hb_020712_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0403101 0 0.108466 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.150181 0 0

CAGE analysis