Hb_006907_090

Information

Type -
Description -
Location Contig6907: 49509-51142
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54323: 47991-48760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_090 0.0 - - -
2 Hb_015475_010 0.2435144202 - - hypothetical protein VITISV_034342 [Vitis vinifera]
3 Hb_001060_080 0.257232971 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
4 Hb_152362_010 0.2784606097 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
5 Hb_000120_690 0.2835647834 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
6 Hb_001235_090 0.2954652724 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
7 Hb_006788_080 0.3139825885 - - ammonium transporter, putative [Ricinus communis]
8 Hb_176472_010 0.3229579338 - - BnaC01g33060D [Brassica napus]
9 Hb_117807_030 0.3292495827 - - Protein MCM10 [Gossypium arboreum]
10 Hb_000925_040 0.3410674593 - - kinase, putative [Ricinus communis]
11 Hb_005599_060 0.3469002657 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
12 Hb_000264_220 0.3513275383 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
13 Hb_000302_210 0.352914757 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007975_040 0.3560501091 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
15 Hb_000545_160 0.3620388826 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
16 Hb_074108_010 0.3686136237 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_183672_010 0.3760279621 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
18 Hb_003001_020 0.3849160693 - - hypothetical protein JCGZ_17508 [Jatropha curcas]
19 Hb_002999_040 0.3859948835 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012399_010 0.3903719866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006907_090 Hb_006907_090 Hb_015475_010 Hb_015475_010 Hb_006907_090--Hb_015475_010 Hb_001060_080 Hb_001060_080 Hb_006907_090--Hb_001060_080 Hb_152362_010 Hb_152362_010 Hb_006907_090--Hb_152362_010 Hb_000120_690 Hb_000120_690 Hb_006907_090--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_006907_090--Hb_001235_090 Hb_006788_080 Hb_006788_080 Hb_006907_090--Hb_006788_080 Hb_000925_040 Hb_000925_040 Hb_015475_010--Hb_000925_040 Hb_001818_030 Hb_001818_030 Hb_015475_010--Hb_001818_030 Hb_002631_190 Hb_002631_190 Hb_015475_010--Hb_002631_190 Hb_002999_040 Hb_002999_040 Hb_015475_010--Hb_002999_040 Hb_008864_020 Hb_008864_020 Hb_015475_010--Hb_008864_020 Hb_001060_080--Hb_006788_080 Hb_007403_080 Hb_007403_080 Hb_001060_080--Hb_007403_080 Hb_001545_190 Hb_001545_190 Hb_001060_080--Hb_001545_190 Hb_000061_280 Hb_000061_280 Hb_001060_080--Hb_000061_280 Hb_117807_030 Hb_117807_030 Hb_001060_080--Hb_117807_030 Hb_000264_220 Hb_000264_220 Hb_152362_010--Hb_000264_220 Hb_152362_010--Hb_002999_040 Hb_000440_030 Hb_000440_030 Hb_152362_010--Hb_000440_030 Hb_002498_130 Hb_002498_130 Hb_152362_010--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_152362_010--Hb_000781_050 Hb_000120_690--Hb_001235_090 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_176472_010 Hb_176472_010 Hb_000120_690--Hb_176472_010 Hb_000545_160 Hb_000545_160 Hb_001235_090--Hb_000545_160 Hb_001235_090--Hb_176472_010 Hb_001235_090--Hb_117807_030 Hb_001235_090--Hb_007975_040 Hb_000042_370 Hb_000042_370 Hb_006788_080--Hb_000042_370 Hb_003747_110 Hb_003747_110 Hb_006788_080--Hb_003747_110 Hb_003799_020 Hb_003799_020 Hb_006788_080--Hb_003799_020 Hb_006788_080--Hb_000061_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.020406 0.0183337 0.0196953 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0806838 0 0

CAGE analysis