Hb_007403_080

Information

Type -
Description -
Location Contig7403: 62729-63310
Sequence    

Annotation

kegg
ID rcu:RCOM_0046510
description hypothetical protein
nr
ID XP_002529041.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSS2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0046510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007403_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000062_010 0.2929390123 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
3 Hb_171537_010 0.2988227356 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
4 Hb_001060_080 0.3107843555 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
5 Hb_026198_030 0.3332375999 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
6 Hb_182750_010 0.3336913506 - - hypothetical protein MIMGU_mgv1a0001602mg, partial [Erythranthe guttata]
7 Hb_002876_160 0.3350135088 - - sucrose transporter 1 [Hevea brasiliensis]
8 Hb_003038_010 0.3363948594 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_002760_040 0.3439434459 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
10 Hb_158803_020 0.3449151661 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
11 Hb_009393_060 0.3474551983 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_075449_030 0.3481163493 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
13 Hb_155642_010 0.3495907197 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
14 Hb_001231_040 0.3549903599 - - hypothetical protein POPTR_0006s06470g [Populus trichocarpa]
15 Hb_187697_010 0.3576783003 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_000191_010 0.3577859299 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_004109_070 0.3577978367 - - hypothetical protein PRUPE_ppa010934mg [Prunus persica]
18 Hb_000483_040 0.3603213568 - - Cell division protein ftsH, putative [Ricinus communis]
19 Hb_125981_010 0.3629483889 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
20 Hb_002387_080 0.3637373993 - - hypothetical protein JCGZ_25275 [Jatropha curcas]

Gene co-expression network

sample Hb_007403_080 Hb_007403_080 Hb_000062_010 Hb_000062_010 Hb_007403_080--Hb_000062_010 Hb_171537_010 Hb_171537_010 Hb_007403_080--Hb_171537_010 Hb_001060_080 Hb_001060_080 Hb_007403_080--Hb_001060_080 Hb_026198_030 Hb_026198_030 Hb_007403_080--Hb_026198_030 Hb_182750_010 Hb_182750_010 Hb_007403_080--Hb_182750_010 Hb_002876_160 Hb_002876_160 Hb_007403_080--Hb_002876_160 Hb_003226_080 Hb_003226_080 Hb_000062_010--Hb_003226_080 Hb_001059_090 Hb_001059_090 Hb_000062_010--Hb_001059_090 Hb_006545_020 Hb_006545_020 Hb_000062_010--Hb_006545_020 Hb_008380_010 Hb_008380_010 Hb_000062_010--Hb_008380_010 Hb_007951_120 Hb_007951_120 Hb_000062_010--Hb_007951_120 Hb_000109_130 Hb_000109_130 Hb_000062_010--Hb_000109_130 Hb_002383_030 Hb_002383_030 Hb_171537_010--Hb_002383_030 Hb_171537_010--Hb_002876_160 Hb_074108_010 Hb_074108_010 Hb_171537_010--Hb_074108_010 Hb_000210_090 Hb_000210_090 Hb_171537_010--Hb_000210_090 Hb_002760_040 Hb_002760_040 Hb_171537_010--Hb_002760_040 Hb_002700_080 Hb_002700_080 Hb_171537_010--Hb_002700_080 Hb_006907_090 Hb_006907_090 Hb_001060_080--Hb_006907_090 Hb_006788_080 Hb_006788_080 Hb_001060_080--Hb_006788_080 Hb_001545_190 Hb_001545_190 Hb_001060_080--Hb_001545_190 Hb_000061_280 Hb_000061_280 Hb_001060_080--Hb_000061_280 Hb_117807_030 Hb_117807_030 Hb_001060_080--Hb_117807_030 Hb_000398_050 Hb_000398_050 Hb_026198_030--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_026198_030--Hb_000028_500 Hb_023344_070 Hb_023344_070 Hb_026198_030--Hb_023344_070 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_026198_030--Hb_002876_160 Hb_009393_060 Hb_009393_060 Hb_182750_010--Hb_009393_060 Hb_182750_010--Hb_002760_040 Hb_000179_230 Hb_000179_230 Hb_182750_010--Hb_000179_230 Hb_001248_110 Hb_001248_110 Hb_182750_010--Hb_001248_110 Hb_003086_050 Hb_003086_050 Hb_182750_010--Hb_003086_050 Hb_031295_010 Hb_031295_010 Hb_182750_010--Hb_031295_010 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_000384_110 Hb_000384_110 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.472384 0.0489339 0.148595 0.055894 0.0533952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.184448 0 0

CAGE analysis