Hb_009393_060

Information

Type -
Description -
Location Contig9393: 27858-28430
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B326
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_060 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_003097_090 0.1880624218 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007429_020 0.1948680189 - - kinase, putative [Ricinus communis]
4 Hb_000566_190 0.1970183971 - - unnamed protein product [Vitis vinifera]
5 Hb_006414_020 0.1995965435 transcription factor TF Family: MYB -
6 Hb_008380_010 0.200241345 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
7 Hb_182750_010 0.2062932686 - - hypothetical protein MIMGU_mgv1a0001602mg, partial [Erythranthe guttata]
8 Hb_000172_080 0.2080077466 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
9 Hb_001248_110 0.2130283767 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_000359_080 0.2131806664 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
11 Hb_000103_400 0.2191339745 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
12 Hb_012787_040 0.2203791647 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
13 Hb_008253_040 0.2215303097 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
14 Hb_000179_230 0.2225367923 - - PREDICTED: myosin-17 [Jatropha curcas]
15 Hb_000856_410 0.2228847023 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000087_100 0.2286882027 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
17 Hb_002915_070 0.2320548174 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
18 Hb_011360_090 0.2322998995 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
19 Hb_008021_010 0.232609335 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_001345_030 0.2337332813 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_009393_060 Hb_009393_060 Hb_003097_090 Hb_003097_090 Hb_009393_060--Hb_003097_090 Hb_007429_020 Hb_007429_020 Hb_009393_060--Hb_007429_020 Hb_000566_190 Hb_000566_190 Hb_009393_060--Hb_000566_190 Hb_006414_020 Hb_006414_020 Hb_009393_060--Hb_006414_020 Hb_008380_010 Hb_008380_010 Hb_009393_060--Hb_008380_010 Hb_182750_010 Hb_182750_010 Hb_009393_060--Hb_182750_010 Hb_003097_090--Hb_008380_010 Hb_000532_030 Hb_000532_030 Hb_003097_090--Hb_000532_030 Hb_181824_010 Hb_181824_010 Hb_003097_090--Hb_181824_010 Hb_001989_060 Hb_001989_060 Hb_003097_090--Hb_001989_060 Hb_011360_090 Hb_011360_090 Hb_003097_090--Hb_011360_090 Hb_000181_080 Hb_000181_080 Hb_007429_020--Hb_000181_080 Hb_000003_420 Hb_000003_420 Hb_007429_020--Hb_000003_420 Hb_007429_020--Hb_008380_010 Hb_000359_080 Hb_000359_080 Hb_007429_020--Hb_000359_080 Hb_029866_050 Hb_029866_050 Hb_007429_020--Hb_029866_050 Hb_004531_010 Hb_004531_010 Hb_007429_020--Hb_004531_010 Hb_000566_190--Hb_006414_020 Hb_002154_020 Hb_002154_020 Hb_000566_190--Hb_002154_020 Hb_000448_060 Hb_000448_060 Hb_000566_190--Hb_000448_060 Hb_000107_440 Hb_000107_440 Hb_000566_190--Hb_000107_440 Hb_001248_110 Hb_001248_110 Hb_000566_190--Hb_001248_110 Hb_012787_040 Hb_012787_040 Hb_000566_190--Hb_012787_040 Hb_000803_060 Hb_000803_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_006414_020--Hb_012787_040 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_001258_150 Hb_001258_150 Hb_006414_020--Hb_001258_150 Hb_098160_010 Hb_098160_010 Hb_008380_010--Hb_098160_010 Hb_008380_010--Hb_006414_020 Hb_001898_010 Hb_001898_010 Hb_008380_010--Hb_001898_010 Hb_008380_010--Hb_000103_400 Hb_033149_020 Hb_033149_020 Hb_008380_010--Hb_033149_020 Hb_008380_010--Hb_181824_010 Hb_002760_040 Hb_002760_040 Hb_182750_010--Hb_002760_040 Hb_000179_230 Hb_000179_230 Hb_182750_010--Hb_000179_230 Hb_182750_010--Hb_001248_110 Hb_003086_050 Hb_003086_050 Hb_182750_010--Hb_003086_050 Hb_031295_010 Hb_031295_010 Hb_182750_010--Hb_031295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0930449 4.68675 0.839463 1.03555 0 0.518365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108219 0 0.738434 0.384745 0.653265

CAGE analysis