Hb_003097_090

Information

Type -
Description -
Location Contig3097: 67161-69848
Sequence    

Annotation

kegg
ID rcu:RCOM_1454020
description hypothetical protein
nr
ID XP_002513121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DJC8
description Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1
trembl
ID B9RGG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454020 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transmembrane protein 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008380_010 0.152026752 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
3 Hb_000532_030 0.1814218844 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
4 Hb_009393_060 0.1880624218 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_181824_010 0.1927793356 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_001989_060 0.1966128409 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
7 Hb_011360_090 0.1991528932 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_007429_020 0.2039280764 - - kinase, putative [Ricinus communis]
9 Hb_007120_010 0.2063860693 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
10 Hb_000283_100 0.2072404939 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
11 Hb_006414_020 0.2074538747 transcription factor TF Family: MYB -
12 Hb_024105_010 0.2086412453 - - CCHC-type integrase [Theobroma cacao]
13 Hb_000451_040 0.2089226373 - - conserved hypothetical protein [Ricinus communis]
14 Hb_033149_020 0.2102076317 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_004460_040 0.2135431253 - - -
16 Hb_007951_120 0.2140738864 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
17 Hb_000373_250 0.2153867617 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
18 Hb_000103_400 0.2155166637 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
19 Hb_010589_130 0.2159193792 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
20 Hb_008021_010 0.2161845597 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003097_090 Hb_003097_090 Hb_008380_010 Hb_008380_010 Hb_003097_090--Hb_008380_010 Hb_000532_030 Hb_000532_030 Hb_003097_090--Hb_000532_030 Hb_009393_060 Hb_009393_060 Hb_003097_090--Hb_009393_060 Hb_181824_010 Hb_181824_010 Hb_003097_090--Hb_181824_010 Hb_001989_060 Hb_001989_060 Hb_003097_090--Hb_001989_060 Hb_011360_090 Hb_011360_090 Hb_003097_090--Hb_011360_090 Hb_098160_010 Hb_098160_010 Hb_008380_010--Hb_098160_010 Hb_006414_020 Hb_006414_020 Hb_008380_010--Hb_006414_020 Hb_001898_010 Hb_001898_010 Hb_008380_010--Hb_001898_010 Hb_000103_400 Hb_000103_400 Hb_008380_010--Hb_000103_400 Hb_033149_020 Hb_033149_020 Hb_008380_010--Hb_033149_020 Hb_008380_010--Hb_181824_010 Hb_006538_030 Hb_006538_030 Hb_000532_030--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000532_030--Hb_000045_140 Hb_000283_100 Hb_000283_100 Hb_000532_030--Hb_000283_100 Hb_000805_150 Hb_000805_150 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_004787_100 Hb_004787_100 Hb_000532_030--Hb_004787_100 Hb_007429_020 Hb_007429_020 Hb_009393_060--Hb_007429_020 Hb_000566_190 Hb_000566_190 Hb_009393_060--Hb_000566_190 Hb_009393_060--Hb_006414_020 Hb_009393_060--Hb_008380_010 Hb_182750_010 Hb_182750_010 Hb_009393_060--Hb_182750_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_001989_060--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_001989_060--Hb_010126_030 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_001662_170 Hb_001662_170 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_011360_090--Hb_006414_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69201 22.0922 8.76859 4.97499 0 1.11707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0607333 0.119453 3.27967 1.37276 1.50092

CAGE analysis