Hb_074108_010

Information

Type -
Description -
Location Contig74108: 25-525
Sequence    

Annotation

kegg
ID rcu:RCOM_1161670
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002520551.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9SHF3
description Protein argonaute 2 OS=Arabidopsis thaliana GN=AGO2 PE=1 SV=1
trembl
ID B9S3I2
description Eukaryotic translation initiation factor 2c, putative OS=Ricinus communis GN=RCOM_1161670 PE=4 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56388: 9-230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074108_010 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_011671_060 0.2128684692 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
3 Hb_171537_010 0.2758260928 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
4 Hb_000304_060 0.288646596 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
5 Hb_002383_030 0.2971538151 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
6 Hb_000980_070 0.3250662455 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
7 Hb_001976_080 0.3280459816 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
8 Hb_001235_090 0.3456698462 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
9 Hb_006970_070 0.3466901865 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001060_080 0.3585702413 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_005699_080 0.3609138864 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
12 Hb_000000_100 0.3617235696 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
13 Hb_012586_030 0.3628911086 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
14 Hb_006907_090 0.3686136237 - - -
15 Hb_163837_010 0.3719859719 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
16 Hb_000042_140 0.3720978433 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
17 Hb_002876_160 0.3738196918 - - sucrose transporter 1 [Hevea brasiliensis]
18 Hb_000545_160 0.3743096711 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
19 Hb_023344_070 0.3863213621 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_012760_020 0.3928984191 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]

Gene co-expression network

sample Hb_074108_010 Hb_074108_010 Hb_011671_060 Hb_011671_060 Hb_074108_010--Hb_011671_060 Hb_171537_010 Hb_171537_010 Hb_074108_010--Hb_171537_010 Hb_000304_060 Hb_000304_060 Hb_074108_010--Hb_000304_060 Hb_002383_030 Hb_002383_030 Hb_074108_010--Hb_002383_030 Hb_000980_070 Hb_000980_070 Hb_074108_010--Hb_000980_070 Hb_001976_080 Hb_001976_080 Hb_074108_010--Hb_001976_080 Hb_011671_060--Hb_002383_030 Hb_011671_060--Hb_171537_010 Hb_000120_690 Hb_000120_690 Hb_011671_060--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_011671_060--Hb_001235_090 Hb_150851_010 Hb_150851_010 Hb_011671_060--Hb_150851_010 Hb_171537_010--Hb_002383_030 Hb_002876_160 Hb_002876_160 Hb_171537_010--Hb_002876_160 Hb_000210_090 Hb_000210_090 Hb_171537_010--Hb_000210_090 Hb_002760_040 Hb_002760_040 Hb_171537_010--Hb_002760_040 Hb_002700_080 Hb_002700_080 Hb_171537_010--Hb_002700_080 Hb_163837_010 Hb_163837_010 Hb_000304_060--Hb_163837_010 Hb_000000_100 Hb_000000_100 Hb_000304_060--Hb_000000_100 Hb_012522_010 Hb_012522_010 Hb_000304_060--Hb_012522_010 Hb_012760_020 Hb_012760_020 Hb_000304_060--Hb_012760_020 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000251_090 Hb_000251_090 Hb_000304_060--Hb_000251_090 Hb_023755_010 Hb_023755_010 Hb_002383_030--Hb_023755_010 Hb_066655_010 Hb_066655_010 Hb_002383_030--Hb_066655_010 Hb_000418_070 Hb_000418_070 Hb_002383_030--Hb_000418_070 Hb_002383_030--Hb_002876_160 Hb_000980_070--Hb_012760_020 Hb_008494_050 Hb_008494_050 Hb_000980_070--Hb_008494_050 Hb_000980_070--Hb_000000_100 Hb_000108_170 Hb_000108_170 Hb_000980_070--Hb_000108_170 Hb_000554_030 Hb_000554_030 Hb_000980_070--Hb_000554_030 Hb_000980_070--Hb_000304_060 Hb_001976_080--Hb_000000_100 Hb_008511_010 Hb_008511_010 Hb_001976_080--Hb_008511_010 Hb_001976_080--Hb_000304_060 Hb_000192_110 Hb_000192_110 Hb_001976_080--Hb_000192_110 Hb_015970_010 Hb_015970_010 Hb_001976_080--Hb_015970_010 Hb_108886_010 Hb_108886_010 Hb_001976_080--Hb_108886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0571456 1.52364 0.222831 0.519088 0.937056 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.20606 0.305769 0

CAGE analysis