Hb_023755_010

Information

Type -
Description -
Location Contig23755: 285-1145
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023755_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_003032_020 0.1782259664 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
3 Hb_000442_080 0.1953912446 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
4 Hb_000215_140 0.1962752167 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
5 Hb_000251_090 0.2018523062 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
6 Hb_000335_020 0.2022412513 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000883_030 0.2029004421 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
8 Hb_000010_340 0.2048791488 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
9 Hb_012490_090 0.2066402723 - - PREDICTED: myosin-17 [Jatropha curcas]
10 Hb_000046_580 0.2076845403 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
11 Hb_001322_170 0.2133639495 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
12 Hb_006637_050 0.2139324056 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
13 Hb_003906_160 0.2162344376 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
14 Hb_000739_310 0.2168575785 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
15 Hb_000352_190 0.2172492811 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
16 Hb_000076_140 0.2174858241 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000567_380 0.2184992966 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
18 Hb_003605_110 0.2185596925 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
19 Hb_002063_020 0.221436485 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
20 Hb_001916_070 0.2225993526 - - PREDICTED: phytochrome C [Jatropha curcas]

Gene co-expression network

sample Hb_023755_010 Hb_023755_010 Hb_003032_020 Hb_003032_020 Hb_023755_010--Hb_003032_020 Hb_000442_080 Hb_000442_080 Hb_023755_010--Hb_000442_080 Hb_000215_140 Hb_000215_140 Hb_023755_010--Hb_000215_140 Hb_000251_090 Hb_000251_090 Hb_023755_010--Hb_000251_090 Hb_000335_020 Hb_000335_020 Hb_023755_010--Hb_000335_020 Hb_000883_030 Hb_000883_030 Hb_023755_010--Hb_000883_030 Hb_007820_010 Hb_007820_010 Hb_003032_020--Hb_007820_010 Hb_027472_070 Hb_027472_070 Hb_003032_020--Hb_027472_070 Hb_002099_080 Hb_002099_080 Hb_003032_020--Hb_002099_080 Hb_000352_190 Hb_000352_190 Hb_003032_020--Hb_000352_190 Hb_002063_020 Hb_002063_020 Hb_003032_020--Hb_002063_020 Hb_000366_040 Hb_000366_040 Hb_003032_020--Hb_000366_040 Hb_000832_020 Hb_000832_020 Hb_000442_080--Hb_000832_020 Hb_000011_330 Hb_000011_330 Hb_000442_080--Hb_000011_330 Hb_002217_300 Hb_002217_300 Hb_000442_080--Hb_002217_300 Hb_001266_060 Hb_001266_060 Hb_000442_080--Hb_001266_060 Hb_002205_190 Hb_002205_190 Hb_000442_080--Hb_002205_190 Hb_073452_010 Hb_073452_010 Hb_000442_080--Hb_073452_010 Hb_012490_090 Hb_012490_090 Hb_000215_140--Hb_012490_090 Hb_000412_010 Hb_000412_010 Hb_000215_140--Hb_000412_010 Hb_000313_120 Hb_000313_120 Hb_000215_140--Hb_000313_120 Hb_000720_130 Hb_000720_130 Hb_000215_140--Hb_000720_130 Hb_000230_260 Hb_000230_260 Hb_000215_140--Hb_000230_260 Hb_001963_100 Hb_001963_100 Hb_000215_140--Hb_001963_100 Hb_000251_090--Hb_073452_010 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_000514_060 Hb_000514_060 Hb_000335_020--Hb_000514_060 Hb_046198_010 Hb_046198_010 Hb_000335_020--Hb_046198_010 Hb_001956_200 Hb_001956_200 Hb_000335_020--Hb_001956_200 Hb_000140_230 Hb_000140_230 Hb_000335_020--Hb_000140_230 Hb_008500_010 Hb_008500_010 Hb_000335_020--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_000335_020--Hb_001584_150 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149327 0.306284 0.047684 0.313999 0.672068 0.178537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687405 0.216198 0.878797 0.328317 0.433384

CAGE analysis