Hb_011671_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig11671: 67201-68190
Sequence    

Annotation

kegg
ID rcu:RCOM_1500710
description zinc finger protein, putative
nr
ID KDP22438.1
description hypothetical protein JCGZ_26269 [Jatropha curcas]
swissprot
ID Q9M202
description Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
trembl
ID A0A067JI04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_060 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
2 Hb_074108_010 0.2128684692 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_002383_030 0.3325090622 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_171537_010 0.3438717965 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
5 Hb_000120_690 0.3512489442 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
6 Hb_001235_090 0.3582336081 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
7 Hb_150851_010 0.3591519653 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_000061_280 0.3600962452 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
9 Hb_008835_010 0.3613539451 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
10 Hb_000042_140 0.3677561848 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
11 Hb_012399_010 0.3700583441 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001545_190 0.377823483 - - hypothetical protein VITISV_012031 [Vitis vinifera]
13 Hb_006970_070 0.3817357577 - - conserved hypothetical protein [Ricinus communis]
14 Hb_117807_030 0.3852419663 - - Protein MCM10 [Gossypium arboreum]
15 Hb_001060_080 0.3855330223 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
16 Hb_001976_080 0.3858722153 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
17 Hb_006907_090 0.4054655213 - - -
18 Hb_003025_070 0.408668347 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
19 Hb_176472_010 0.4127605477 - - BnaC01g33060D [Brassica napus]
20 Hb_021419_050 0.4138859969 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]

Gene co-expression network

sample Hb_011671_060 Hb_011671_060 Hb_074108_010 Hb_074108_010 Hb_011671_060--Hb_074108_010 Hb_002383_030 Hb_002383_030 Hb_011671_060--Hb_002383_030 Hb_171537_010 Hb_171537_010 Hb_011671_060--Hb_171537_010 Hb_000120_690 Hb_000120_690 Hb_011671_060--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_011671_060--Hb_001235_090 Hb_150851_010 Hb_150851_010 Hb_011671_060--Hb_150851_010 Hb_074108_010--Hb_171537_010 Hb_000304_060 Hb_000304_060 Hb_074108_010--Hb_000304_060 Hb_074108_010--Hb_002383_030 Hb_000980_070 Hb_000980_070 Hb_074108_010--Hb_000980_070 Hb_001976_080 Hb_001976_080 Hb_074108_010--Hb_001976_080 Hb_002383_030--Hb_171537_010 Hb_023755_010 Hb_023755_010 Hb_002383_030--Hb_023755_010 Hb_066655_010 Hb_066655_010 Hb_002383_030--Hb_066655_010 Hb_000418_070 Hb_000418_070 Hb_002383_030--Hb_000418_070 Hb_002876_160 Hb_002876_160 Hb_002383_030--Hb_002876_160 Hb_171537_010--Hb_002876_160 Hb_000210_090 Hb_000210_090 Hb_171537_010--Hb_000210_090 Hb_002760_040 Hb_002760_040 Hb_171537_010--Hb_002760_040 Hb_002700_080 Hb_002700_080 Hb_171537_010--Hb_002700_080 Hb_000120_690--Hb_001235_090 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_176472_010 Hb_176472_010 Hb_000120_690--Hb_176472_010 Hb_000545_160 Hb_000545_160 Hb_001235_090--Hb_000545_160 Hb_001235_090--Hb_176472_010 Hb_117807_030 Hb_117807_030 Hb_001235_090--Hb_117807_030 Hb_006907_090 Hb_006907_090 Hb_001235_090--Hb_006907_090 Hb_001235_090--Hb_007975_040 Hb_008835_010 Hb_008835_010 Hb_150851_010--Hb_008835_010 Hb_150851_010--Hb_012399_010 Hb_000061_280 Hb_000061_280 Hb_150851_010--Hb_000061_280 Hb_150851_010--Hb_004680_030 Hb_003025_070 Hb_003025_070 Hb_150851_010--Hb_003025_070 Hb_001545_190 Hb_001545_190 Hb_150851_010--Hb_001545_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0674291 0 0.0193554 0.0449477 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.148473 0 0

CAGE analysis