Hb_002700_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2700: 147575-151917
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP40522.1
description hypothetical protein JCGZ_24521 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067KWI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28295: 148939-149143 , PASA_asmbl_28296: 150444-150824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002700_080 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
2 Hb_001019_180 0.1575537628 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
3 Hb_011512_130 0.16425339 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
4 Hb_008066_070 0.1661045405 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
5 Hb_178051_070 0.1666721453 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
6 Hb_002026_060 0.1667342625 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
7 Hb_011311_020 0.167669749 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
8 Hb_003071_020 0.1723672023 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_000330_040 0.1738755353 - - PREDICTED: protein RER1B-like [Jatropha curcas]
10 Hb_002110_030 0.1797284094 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_002876_160 0.1799019774 - - sucrose transporter 1 [Hevea brasiliensis]
12 Hb_005188_030 0.180477327 - - amino acid transporter, putative [Ricinus communis]
13 Hb_011930_070 0.1811193157 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
14 Hb_006663_030 0.1812914584 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_005273_030 0.1847446877 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
16 Hb_000169_170 0.1867837773 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
17 Hb_002631_200 0.1869417995 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
18 Hb_001894_120 0.1880258906 - - nucleoredoxin, putative [Ricinus communis]
19 Hb_000009_330 0.1886789084 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
20 Hb_000627_180 0.1905530775 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002700_080 Hb_002700_080 Hb_001019_180 Hb_001019_180 Hb_002700_080--Hb_001019_180 Hb_011512_130 Hb_011512_130 Hb_002700_080--Hb_011512_130 Hb_008066_070 Hb_008066_070 Hb_002700_080--Hb_008066_070 Hb_178051_070 Hb_178051_070 Hb_002700_080--Hb_178051_070 Hb_002026_060 Hb_002026_060 Hb_002700_080--Hb_002026_060 Hb_011311_020 Hb_011311_020 Hb_002700_080--Hb_011311_020 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002110_030 Hb_002110_030 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_005550_010 Hb_005550_010 Hb_011512_130--Hb_005550_010 Hb_011512_130--Hb_008066_070 Hb_002631_200 Hb_002631_200 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_000700_060 Hb_000700_060 Hb_178051_070--Hb_000700_060 Hb_178051_070--Hb_023226_080 Hb_004032_040 Hb_004032_040 Hb_178051_070--Hb_004032_040 Hb_000169_170 Hb_000169_170 Hb_178051_070--Hb_000169_170 Hb_002284_170 Hb_002284_170 Hb_178051_070--Hb_002284_170 Hb_010712_090 Hb_010712_090 Hb_178051_070--Hb_010712_090 Hb_005496_180 Hb_005496_180 Hb_002026_060--Hb_005496_180 Hb_014068_050 Hb_014068_050 Hb_002026_060--Hb_014068_050 Hb_000634_070 Hb_000634_070 Hb_002026_060--Hb_000634_070 Hb_000976_290 Hb_000976_290 Hb_002026_060--Hb_000976_290 Hb_000809_090 Hb_000809_090 Hb_002026_060--Hb_000809_090 Hb_002097_200 Hb_002097_200 Hb_002026_060--Hb_002097_200 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_000987_140 Hb_000987_140 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286361 1.31877 0.157029 0.492678 0.663111 0.166354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22208 0.194184 0.614355 0.73877 0.103845

CAGE analysis