Hb_000210_090

Information

Type -
Description -
Location Contig210: 139837-144512
Sequence    

Annotation

kegg
ID rcu:RCOM_0225400
description carboxy-lyase, putative
nr
ID XP_012074344.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
swissprot
ID Q8GW29
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2
trembl
ID A0A067KM99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08777 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_090 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
2 Hb_000638_210 0.1972629767 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
3 Hb_007379_020 0.2247788106 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
4 Hb_003078_050 0.2276263163 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
5 Hb_032264_090 0.2308064298 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
6 Hb_002026_060 0.2314547199 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
7 Hb_005656_140 0.2455461602 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
8 Hb_000634_070 0.2488819097 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
9 Hb_002700_080 0.2499847389 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
10 Hb_002774_140 0.2502467274 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_002876_160 0.2555597565 - - sucrose transporter 1 [Hevea brasiliensis]
12 Hb_000215_410 0.2571520193 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
13 Hb_008173_030 0.2579555979 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
14 Hb_001195_680 0.258746492 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
15 Hb_000732_250 0.2664502263 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
16 Hb_008066_070 0.2672073335 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_001205_030 0.2676066914 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
18 Hb_000649_240 0.2709770925 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
19 Hb_000483_040 0.2711512429 - - Cell division protein ftsH, putative [Ricinus communis]
20 Hb_000258_380 0.2711930031 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000210_090 Hb_000210_090 Hb_000638_210 Hb_000638_210 Hb_000210_090--Hb_000638_210 Hb_007379_020 Hb_007379_020 Hb_000210_090--Hb_007379_020 Hb_003078_050 Hb_003078_050 Hb_000210_090--Hb_003078_050 Hb_032264_090 Hb_032264_090 Hb_000210_090--Hb_032264_090 Hb_002026_060 Hb_002026_060 Hb_000210_090--Hb_002026_060 Hb_005656_140 Hb_005656_140 Hb_000210_090--Hb_005656_140 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_000638_210--Hb_003078_050 Hb_009838_060 Hb_009838_060 Hb_000638_210--Hb_009838_060 Hb_008173_030 Hb_008173_030 Hb_000638_210--Hb_008173_030 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070 Hb_007379_020--Hb_009838_060 Hb_002918_150 Hb_002918_150 Hb_007379_020--Hb_002918_150 Hb_005400_040 Hb_005400_040 Hb_007379_020--Hb_005400_040 Hb_006916_200 Hb_006916_200 Hb_007379_020--Hb_006916_200 Hb_001096_100 Hb_001096_100 Hb_007379_020--Hb_001096_100 Hb_008066_070 Hb_008066_070 Hb_007379_020--Hb_008066_070 Hb_003078_050--Hb_000634_070 Hb_000069_230 Hb_000069_230 Hb_003078_050--Hb_000069_230 Hb_028207_040 Hb_028207_040 Hb_003078_050--Hb_028207_040 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_000008_110 Hb_000008_110 Hb_032264_090--Hb_000008_110 Hb_002110_240 Hb_002110_240 Hb_032264_090--Hb_002110_240 Hb_032264_090--Hb_008173_030 Hb_032264_090--Hb_000638_210 Hb_000672_150 Hb_000672_150 Hb_032264_090--Hb_000672_150 Hb_005496_180 Hb_005496_180 Hb_002026_060--Hb_005496_180 Hb_014068_050 Hb_014068_050 Hb_002026_060--Hb_014068_050 Hb_002026_060--Hb_000634_070 Hb_000976_290 Hb_000976_290 Hb_002026_060--Hb_000976_290 Hb_000809_090 Hb_000809_090 Hb_002026_060--Hb_000809_090 Hb_002097_200 Hb_002097_200 Hb_002026_060--Hb_002097_200 Hb_003494_060 Hb_003494_060 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_005656_140--Hb_009838_060 Hb_129204_060 Hb_129204_060 Hb_005656_140--Hb_129204_060 Hb_001141_360 Hb_001141_360 Hb_005656_140--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_005656_140--Hb_002235_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206545 1.91521 0.059533 0.336807 0.2657 0.0348757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363348 0.214201 0.882967 0.349967 0

CAGE analysis