Hb_007379_020

Information

Type -
Description -
Location Contig7379: 10739-13179
Sequence    

Annotation

kegg
ID vvi:100256743
description TMV resistance protein N-like
nr
ID KDP22127.1
description hypothetical protein JCGZ_25958 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067JE77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25958 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007379_020 0.0 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
2 Hb_009838_060 0.1832482766 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002918_150 0.1848365318 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
4 Hb_005400_040 0.2001558728 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
5 Hb_006916_200 0.2047323809 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
6 Hb_001096_100 0.2048599086 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008066_070 0.2109819294 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
8 Hb_000049_090 0.2123792603 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
9 Hb_002774_140 0.2139331142 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_117895_010 0.2147470554 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
11 Hb_000634_070 0.2169329353 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
12 Hb_000486_070 0.217211162 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
13 Hb_005656_140 0.2173296496 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
14 Hb_003224_030 0.2186675293 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
15 Hb_129204_060 0.2209120213 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_005147_040 0.2236130797 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
17 Hb_002026_060 0.2242204045 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
18 Hb_000210_090 0.2247788106 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
19 Hb_005096_010 0.2276238405 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
20 Hb_000175_500 0.2280749437 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]

Gene co-expression network

sample Hb_007379_020 Hb_007379_020 Hb_009838_060 Hb_009838_060 Hb_007379_020--Hb_009838_060 Hb_002918_150 Hb_002918_150 Hb_007379_020--Hb_002918_150 Hb_005400_040 Hb_005400_040 Hb_007379_020--Hb_005400_040 Hb_006916_200 Hb_006916_200 Hb_007379_020--Hb_006916_200 Hb_001096_100 Hb_001096_100 Hb_007379_020--Hb_001096_100 Hb_008066_070 Hb_008066_070 Hb_007379_020--Hb_008066_070 Hb_003494_060 Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_009838_060--Hb_001141_360 Hb_012760_010 Hb_012760_010 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_048653_020 Hb_048653_020 Hb_002918_150--Hb_048653_020 Hb_011120_020 Hb_011120_020 Hb_002918_150--Hb_011120_020 Hb_000809_080 Hb_000809_080 Hb_002918_150--Hb_000809_080 Hb_000220_090 Hb_000220_090 Hb_002918_150--Hb_000220_090 Hb_138575_010 Hb_138575_010 Hb_002918_150--Hb_138575_010 Hb_002918_150--Hb_009838_060 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005288_020 Hb_005288_020 Hb_005400_040--Hb_005288_020 Hb_005539_020 Hb_005539_020 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290 Hb_003531_040 Hb_003531_040 Hb_006916_200--Hb_003531_040 Hb_003913_030 Hb_003913_030 Hb_006916_200--Hb_003913_030 Hb_000008_110 Hb_000008_110 Hb_006916_200--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_006916_200--Hb_000345_500 Hb_006916_200--Hb_000220_090 Hb_001511_190 Hb_001511_190 Hb_006916_200--Hb_001511_190 Hb_164945_040 Hb_164945_040 Hb_001096_100--Hb_164945_040 Hb_002301_380 Hb_002301_380 Hb_001096_100--Hb_002301_380 Hb_155396_010 Hb_155396_010 Hb_001096_100--Hb_155396_010 Hb_004218_090 Hb_004218_090 Hb_001096_100--Hb_004218_090 Hb_003125_030 Hb_003125_030 Hb_001096_100--Hb_003125_030 Hb_005725_060 Hb_005725_060 Hb_001096_100--Hb_005725_060 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.366555 1.55397 0.17096 0.461912 0.0842129 0.0994484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118176 0.154935 0.346296 0.384631 0

CAGE analysis