Hb_001096_100

Information

Type -
Description -
Location Contig1096: 128019-129158
Sequence    

Annotation

kegg
ID rcu:RCOM_1329550
description hypothetical protein
nr
ID XP_002521754.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID B9S6Y5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02864: 128998-129206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_164945_040 0.1295559423 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
3 Hb_002301_380 0.1584778195 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
4 Hb_155396_010 0.161464409 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_004218_090 0.1669537012 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_003125_030 0.167421677 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_005725_060 0.1674405217 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
8 Hb_003376_310 0.1691853685 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
9 Hb_046117_010 0.1734650753 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
10 Hb_000175_500 0.1764847533 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
11 Hb_005096_010 0.1778939265 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
12 Hb_116086_010 0.1790582235 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
13 Hb_001525_010 0.179762317 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
14 Hb_000987_130 0.1799910698 - - -
15 Hb_001638_040 0.1805406276 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
16 Hb_000540_120 0.1813674207 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
17 Hb_003078_050 0.1834810582 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
18 Hb_000243_380 0.1835468442 - - PREDICTED: histone H1 [Jatropha curcas]
19 Hb_001950_030 0.1841870926 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
20 Hb_005288_200 0.1844796482 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_001096_100 Hb_001096_100 Hb_164945_040 Hb_164945_040 Hb_001096_100--Hb_164945_040 Hb_002301_380 Hb_002301_380 Hb_001096_100--Hb_002301_380 Hb_155396_010 Hb_155396_010 Hb_001096_100--Hb_155396_010 Hb_004218_090 Hb_004218_090 Hb_001096_100--Hb_004218_090 Hb_003125_030 Hb_003125_030 Hb_001096_100--Hb_003125_030 Hb_005725_060 Hb_005725_060 Hb_001096_100--Hb_005725_060 Hb_003376_310 Hb_003376_310 Hb_164945_040--Hb_003376_310 Hb_164945_040--Hb_002301_380 Hb_000836_120 Hb_000836_120 Hb_164945_040--Hb_000836_120 Hb_001638_040 Hb_001638_040 Hb_164945_040--Hb_001638_040 Hb_000853_030 Hb_000853_030 Hb_164945_040--Hb_000853_030 Hb_000390_100 Hb_000390_100 Hb_002301_380--Hb_000390_100 Hb_000856_180 Hb_000856_180 Hb_002301_380--Hb_000856_180 Hb_000003_220 Hb_000003_220 Hb_002301_380--Hb_000003_220 Hb_000925_160 Hb_000925_160 Hb_002301_380--Hb_000925_160 Hb_000227_060 Hb_000227_060 Hb_002301_380--Hb_000227_060 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_104265_030 Hb_104265_030 Hb_003125_030--Hb_104265_030 Hb_012226_010 Hb_012226_010 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_005096_010 Hb_005096_010 Hb_005725_060--Hb_005096_010 Hb_006198_020 Hb_006198_020 Hb_005725_060--Hb_006198_020 Hb_000134_340 Hb_000134_340 Hb_005725_060--Hb_000134_340 Hb_007894_130 Hb_007894_130 Hb_005725_060--Hb_007894_130 Hb_005725_060--Hb_004218_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09522 15.4083 1.72709 4.16547 2.14364 2.7568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92683 2.03657 2.8337 2.77655 0.490267

CAGE analysis