Hb_002301_380

Information

Type -
Description -
Location Contig2301: 354090-354881
Sequence    

Annotation

kegg
ID rcu:RCOM_1674160
description hypothetical protein
nr
ID XP_012091616.1
description PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
swissprot
ID Q5M750
description VQ motif-containing protein 4 OS=Arabidopsis thaliana GN=VQ4 PE=1 SV=1
trembl
ID A0A067JB38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21453 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24184: 353923-354973
cDNA
(Sanger)
(ID:Location)		 048_H22.ab1: 354187-354973

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_380 0.0 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
2 Hb_000390_100 0.1202838296 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
3 Hb_000856_180 0.1450879717 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_164945_040 0.1492874084 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
5 Hb_000003_220 0.1519789267 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_000925_160 0.1537153477 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
7 Hb_000227_060 0.1558716664 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_001096_100 0.1584778195 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005725_060 0.1600946319 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
10 Hb_000009_330 0.160494662 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
11 Hb_008066_070 0.1616006712 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
12 Hb_000905_170 0.1636620003 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_001902_190 0.1651163925 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
14 Hb_003071_020 0.1652222564 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
15 Hb_003175_030 0.166135066 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_002046_020 0.1664277558 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
17 Hb_000140_410 0.1679712741 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
18 Hb_005288_010 0.168267157 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001055_030 0.1738865276 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
20 Hb_004108_170 0.174525786 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002301_380 Hb_002301_380 Hb_000390_100 Hb_000390_100 Hb_002301_380--Hb_000390_100 Hb_000856_180 Hb_000856_180 Hb_002301_380--Hb_000856_180 Hb_164945_040 Hb_164945_040 Hb_002301_380--Hb_164945_040 Hb_000003_220 Hb_000003_220 Hb_002301_380--Hb_000003_220 Hb_000925_160 Hb_000925_160 Hb_002301_380--Hb_000925_160 Hb_000227_060 Hb_000227_060 Hb_002301_380--Hb_000227_060 Hb_000390_100--Hb_000227_060 Hb_000390_100--Hb_000925_160 Hb_000627_180 Hb_000627_180 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_000200_280 Hb_000200_280 Hb_000390_100--Hb_000200_280 Hb_003071_020 Hb_003071_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330 Hb_001096_100 Hb_001096_100 Hb_164945_040--Hb_001096_100 Hb_003376_310 Hb_003376_310 Hb_164945_040--Hb_003376_310 Hb_000836_120 Hb_000836_120 Hb_164945_040--Hb_000836_120 Hb_001638_040 Hb_001638_040 Hb_164945_040--Hb_001638_040 Hb_000853_030 Hb_000853_030 Hb_164945_040--Hb_000853_030 Hb_004143_040 Hb_004143_040 Hb_000003_220--Hb_004143_040 Hb_001864_060 Hb_001864_060 Hb_000003_220--Hb_001864_060 Hb_000574_540 Hb_000574_540 Hb_000003_220--Hb_000574_540 Hb_008511_090 Hb_008511_090 Hb_000003_220--Hb_008511_090 Hb_004355_020 Hb_004355_020 Hb_000003_220--Hb_004355_020 Hb_000000_270 Hb_000000_270 Hb_000003_220--Hb_000000_270 Hb_000925_160--Hb_000627_180 Hb_000735_160 Hb_000735_160 Hb_000925_160--Hb_000735_160 Hb_144744_010 Hb_144744_010 Hb_000925_160--Hb_144744_010 Hb_000925_160--Hb_000236_410 Hb_001205_030 Hb_001205_030 Hb_000925_160--Hb_001205_030 Hb_000227_060--Hb_000905_170 Hb_000227_060--Hb_000200_280 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000227_060--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.883 223.362 47.2057 69.6143 41.7177 51.5335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.524 41.2471 68.6139 133.827 14.4508

CAGE analysis