Hb_002383_030

Information

Type -
Description -
Location Contig2383: 18449-26313
Sequence    

Annotation

kegg
ID pxb:103945507
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID KDP35941.1
description hypothetical protein JCGZ_09913 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067KI84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09913 PE=4 SV=1
Gene Ontology
ID GO:0016491
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002383_030 0.0 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
2 Hb_171537_010 0.2355770518 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_074108_010 0.2971538151 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_023755_010 0.3073397218 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_066655_010 0.3086645221 - - PREDICTED: abnormal long morphology protein 1 isoform X3 [Jatropha curcas]
6 Hb_000418_070 0.3173607995 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_002876_160 0.3195493318 - - sucrose transporter 1 [Hevea brasiliensis]
8 Hb_001102_260 0.3239136722 - - hypothetical protein L484_019841 [Morus notabilis]
9 Hb_002450_190 0.3258717839 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
10 Hb_000665_020 0.3262109814 - - -
11 Hb_002131_040 0.3299147935 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
12 Hb_011671_060 0.3325090622 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
13 Hb_000857_050 0.3345229532 - - PREDICTED: protein YLS9 [Jatropha curcas]
14 Hb_000122_250 0.3374726158 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
15 Hb_023344_070 0.3395487532 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_004316_070 0.3406823444 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
17 Hb_127704_010 0.3416245489 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002239_040 0.3436010814 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
19 Hb_001124_220 0.3453403149 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
20 Hb_002700_080 0.3495078705 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]

Gene co-expression network

sample Hb_002383_030 Hb_002383_030 Hb_171537_010 Hb_171537_010 Hb_002383_030--Hb_171537_010 Hb_074108_010 Hb_074108_010 Hb_002383_030--Hb_074108_010 Hb_023755_010 Hb_023755_010 Hb_002383_030--Hb_023755_010 Hb_066655_010 Hb_066655_010 Hb_002383_030--Hb_066655_010 Hb_000418_070 Hb_000418_070 Hb_002383_030--Hb_000418_070 Hb_002876_160 Hb_002876_160 Hb_002383_030--Hb_002876_160 Hb_171537_010--Hb_002876_160 Hb_171537_010--Hb_074108_010 Hb_000210_090 Hb_000210_090 Hb_171537_010--Hb_000210_090 Hb_002760_040 Hb_002760_040 Hb_171537_010--Hb_002760_040 Hb_002700_080 Hb_002700_080 Hb_171537_010--Hb_002700_080 Hb_011671_060 Hb_011671_060 Hb_074108_010--Hb_011671_060 Hb_000304_060 Hb_000304_060 Hb_074108_010--Hb_000304_060 Hb_000980_070 Hb_000980_070 Hb_074108_010--Hb_000980_070 Hb_001976_080 Hb_001976_080 Hb_074108_010--Hb_001976_080 Hb_003032_020 Hb_003032_020 Hb_023755_010--Hb_003032_020 Hb_000442_080 Hb_000442_080 Hb_023755_010--Hb_000442_080 Hb_000215_140 Hb_000215_140 Hb_023755_010--Hb_000215_140 Hb_000251_090 Hb_000251_090 Hb_023755_010--Hb_000251_090 Hb_000335_020 Hb_000335_020 Hb_023755_010--Hb_000335_020 Hb_000883_030 Hb_000883_030 Hb_023755_010--Hb_000883_030 Hb_002918_310 Hb_002918_310 Hb_066655_010--Hb_002918_310 Hb_000941_140 Hb_000941_140 Hb_066655_010--Hb_000941_140 Hb_002999_060 Hb_002999_060 Hb_066655_010--Hb_002999_060 Hb_030827_060 Hb_030827_060 Hb_066655_010--Hb_030827_060 Hb_003327_030 Hb_003327_030 Hb_066655_010--Hb_003327_030 Hb_000122_250 Hb_000122_250 Hb_066655_010--Hb_000122_250 Hb_000525_010 Hb_000525_010 Hb_000418_070--Hb_000525_010 Hb_000987_140 Hb_000987_140 Hb_000418_070--Hb_000987_140 Hb_017987_020 Hb_017987_020 Hb_000418_070--Hb_017987_020 Hb_011311_020 Hb_011311_020 Hb_000418_070--Hb_011311_020 Hb_000836_270 Hb_000836_270 Hb_000418_070--Hb_000836_270 Hb_000179_140 Hb_000179_140 Hb_000418_070--Hb_000179_140 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_000384_110 Hb_000384_110 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.054812 0.515273 0.0108037 0.441693 0.738334 0.130156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0161213 0.012686 0.847866 0.0855895 0.0540299

CAGE analysis