Hb_000665_020

Information

Type -
Description -
Location Contig665: 10677-13867
Sequence    

Annotation

kegg
ID bdi:104584029
description uncharacterized LOC104584029
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53167: 9818-10897 , PASA_asmbl_53168: 11332-11953
cDNA
(Sanger)
(ID:Location)		 002_E01.ab1: 9816-10581 , 009_I24.ab1: 9818-10521 , 020_B11.ab1: 9818-10573 , 026_I23.ab1: 9818-10421 , 040_C04.ab1: 9817-10524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_020 0.0 - - -
2 Hb_002876_160 0.2070517931 - - sucrose transporter 1 [Hevea brasiliensis]
3 Hb_000007_180 0.2159506599 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
4 Hb_122408_010 0.2162079511 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_092408_010 0.2207975803 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
6 Hb_000384_110 0.228800926 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002774_140 0.2400986155 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_001950_030 0.2409903179 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
9 Hb_000264_360 0.2455627814 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
10 Hb_000525_010 0.2460669707 - - ring finger protein, putative [Ricinus communis]
11 Hb_004586_210 0.2483347018 - - transcription factor, putative [Ricinus communis]
12 Hb_031862_130 0.2493778619 - - transcription factor, putative [Ricinus communis]
13 Hb_000987_060 0.2512709857 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
14 Hb_004597_010 0.2543667266 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
15 Hb_000680_050 0.2553114956 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
16 Hb_000665_010 0.2554427888 - - hypothetical protein 20 [Hevea brasiliensis]
17 Hb_002110_020 0.2582144801 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
18 Hb_003050_390 0.2585666164 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
19 Hb_007850_090 0.2590245915 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
20 Hb_001357_040 0.2605923208 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000665_020 Hb_000665_020 Hb_002876_160 Hb_002876_160 Hb_000665_020--Hb_002876_160 Hb_000007_180 Hb_000007_180 Hb_000665_020--Hb_000007_180 Hb_122408_010 Hb_122408_010 Hb_000665_020--Hb_122408_010 Hb_092408_010 Hb_092408_010 Hb_000665_020--Hb_092408_010 Hb_000384_110 Hb_000384_110 Hb_000665_020--Hb_000384_110 Hb_002774_140 Hb_002774_140 Hb_000665_020--Hb_002774_140 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_002876_160--Hb_000384_110 Hb_000398_010 Hb_000398_010 Hb_000007_180--Hb_000398_010 Hb_000178_130 Hb_000178_130 Hb_000007_180--Hb_000178_130 Hb_004204_170 Hb_004204_170 Hb_000007_180--Hb_004204_170 Hb_001799_210 Hb_001799_210 Hb_000007_180--Hb_001799_210 Hb_001892_020 Hb_001892_020 Hb_000007_180--Hb_001892_020 Hb_001377_260 Hb_001377_260 Hb_000007_180--Hb_001377_260 Hb_122408_010--Hb_004204_170 Hb_003050_390 Hb_003050_390 Hb_122408_010--Hb_003050_390 Hb_181810_020 Hb_181810_020 Hb_122408_010--Hb_181810_020 Hb_122408_010--Hb_092408_010 Hb_001178_140 Hb_001178_140 Hb_122408_010--Hb_001178_140 Hb_000680_050 Hb_000680_050 Hb_122408_010--Hb_000680_050 Hb_008643_200 Hb_008643_200 Hb_092408_010--Hb_008643_200 Hb_000432_090 Hb_000432_090 Hb_092408_010--Hb_000432_090 Hb_013241_010 Hb_013241_010 Hb_092408_010--Hb_013241_010 Hb_000270_510 Hb_000270_510 Hb_092408_010--Hb_000270_510 Hb_000011_400 Hb_000011_400 Hb_092408_010--Hb_000011_400 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_018118_030 Hb_018118_030 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_000256_060 Hb_000256_060 Hb_002774_140--Hb_000256_060 Hb_007379_020 Hb_007379_020 Hb_002774_140--Hb_007379_020 Hb_002774_140--Hb_002876_160 Hb_002774_140--Hb_092408_010 Hb_000429_180 Hb_000429_180 Hb_002774_140--Hb_000429_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27136 1.25553 0.322194 1.12155 0.493685 0.511088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262392 0.412288 1.57597 0.128382 0

CAGE analysis