Hb_002774_140

Information

Type transcription factor
Description TF Family: mTERF
Location Contig2774: 118844-119573
Sequence    

Annotation

kegg
ID rcu:RCOM_1034690
description hypothetical protein
nr
ID XP_002513901.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_140 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_000256_060 0.1885631584 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
3 Hb_007379_020 0.2139331142 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
4 Hb_002876_160 0.2287181728 - - sucrose transporter 1 [Hevea brasiliensis]
5 Hb_092408_010 0.2362789268 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
6 Hb_000429_180 0.2380924539 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000665_020 0.2400986155 - - -
8 Hb_005548_020 0.2420553839 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
9 Hb_024682_020 0.249440962 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
10 Hb_000210_090 0.2502467274 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
11 Hb_003014_020 0.2506292089 - - electron transporter, putative [Ricinus communis]
12 Hb_006446_010 0.2511922201 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004450_050 0.2540142665 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
14 Hb_005188_030 0.258365184 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000987_060 0.261710128 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
16 Hb_000649_240 0.2621046813 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
17 Hb_003938_160 0.2631843006 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
18 Hb_000126_110 0.2652243954 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
19 Hb_005663_070 0.2662613856 - - dehydrin protein [Manihot esculenta]
20 Hb_005146_080 0.2671087523 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_140 Hb_002774_140 Hb_000256_060 Hb_000256_060 Hb_002774_140--Hb_000256_060 Hb_007379_020 Hb_007379_020 Hb_002774_140--Hb_007379_020 Hb_002876_160 Hb_002876_160 Hb_002774_140--Hb_002876_160 Hb_092408_010 Hb_092408_010 Hb_002774_140--Hb_092408_010 Hb_000429_180 Hb_000429_180 Hb_002774_140--Hb_000429_180 Hb_000665_020 Hb_000665_020 Hb_002774_140--Hb_000665_020 Hb_023344_070 Hb_023344_070 Hb_000256_060--Hb_023344_070 Hb_000398_050 Hb_000398_050 Hb_000256_060--Hb_000398_050 Hb_001103_020 Hb_001103_020 Hb_000256_060--Hb_001103_020 Hb_026198_030 Hb_026198_030 Hb_000256_060--Hb_026198_030 Hb_026048_020 Hb_026048_020 Hb_000256_060--Hb_026048_020 Hb_009838_060 Hb_009838_060 Hb_007379_020--Hb_009838_060 Hb_002918_150 Hb_002918_150 Hb_007379_020--Hb_002918_150 Hb_005400_040 Hb_005400_040 Hb_007379_020--Hb_005400_040 Hb_006916_200 Hb_006916_200 Hb_007379_020--Hb_006916_200 Hb_001096_100 Hb_001096_100 Hb_007379_020--Hb_001096_100 Hb_008066_070 Hb_008066_070 Hb_007379_020--Hb_008066_070 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_000384_110 Hb_000384_110 Hb_002876_160--Hb_000384_110 Hb_002876_160--Hb_000665_020 Hb_008643_200 Hb_008643_200 Hb_092408_010--Hb_008643_200 Hb_000432_090 Hb_000432_090 Hb_092408_010--Hb_000432_090 Hb_013241_010 Hb_013241_010 Hb_092408_010--Hb_013241_010 Hb_122408_010 Hb_122408_010 Hb_092408_010--Hb_122408_010 Hb_000270_510 Hb_000270_510 Hb_092408_010--Hb_000270_510 Hb_000011_400 Hb_000011_400 Hb_092408_010--Hb_000011_400 Hb_002961_060 Hb_002961_060 Hb_000429_180--Hb_002961_060 Hb_000856_180 Hb_000856_180 Hb_000429_180--Hb_000856_180 Hb_001433_140 Hb_001433_140 Hb_000429_180--Hb_001433_140 Hb_001481_160 Hb_001481_160 Hb_000429_180--Hb_001481_160 Hb_001189_110 Hb_001189_110 Hb_000429_180--Hb_001189_110 Hb_004450_050 Hb_004450_050 Hb_000429_180--Hb_004450_050 Hb_000007_180 Hb_000007_180 Hb_000665_020--Hb_000007_180 Hb_000665_020--Hb_122408_010 Hb_000665_020--Hb_092408_010 Hb_000665_020--Hb_000384_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362245 0.826486 0.0709774 0.678037 0.132267 0.0390424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101732 0.239856 0.55892 0.196787 0

CAGE analysis