Hb_002876_160

Information

Type -
Description -
Location Contig2876: 149722-152992
Sequence    

Annotation

kegg
ID rcu:RCOM_0686970
description sucrose transport protein, putative
nr
ID ABJ51933.1
description sucrose transporter 1 [Hevea brasiliensis]
swissprot
ID Q39231
description Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2
trembl
ID Q000Y7
description Sucrose transporter 1 OS=Hevea brasiliensis GN=SUT1 PE=2 SV=1
Gene Ontology
ID GO:0005887
description sucrose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30040: 150044-153121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_160 0.0 - - sucrose transporter 1 [Hevea brasiliensis]
2 Hb_002700_080 0.1799019774 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
3 Hb_002026_060 0.1884093576 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
4 Hb_005188_030 0.1952936317 - - amino acid transporter, putative [Ricinus communis]
5 Hb_023344_060 0.1996822274 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
6 Hb_000384_110 0.2022007426 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000665_020 0.2070517931 - - -
8 Hb_000049_090 0.217715314 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
9 Hb_002053_130 0.2213095731 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
10 Hb_000931_020 0.2285764217 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
11 Hb_002774_140 0.2287181728 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_001950_030 0.2288096171 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
13 Hb_000205_240 0.2294047347 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_003327_070 0.2295694022 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
15 Hb_144096_010 0.2305230905 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_000252_210 0.2314286634 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
17 Hb_006054_030 0.2315750889 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_007379_020 0.2321356054 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
19 Hb_055488_020 0.2323935566 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
20 Hb_002915_070 0.2333754559 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_160 Hb_002876_160 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_000384_110 Hb_000384_110 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020 Hb_001019_180 Hb_001019_180 Hb_002700_080--Hb_001019_180 Hb_011512_130 Hb_011512_130 Hb_002700_080--Hb_011512_130 Hb_008066_070 Hb_008066_070 Hb_002700_080--Hb_008066_070 Hb_178051_070 Hb_178051_070 Hb_002700_080--Hb_178051_070 Hb_002700_080--Hb_002026_060 Hb_011311_020 Hb_011311_020 Hb_002700_080--Hb_011311_020 Hb_005496_180 Hb_005496_180 Hb_002026_060--Hb_005496_180 Hb_014068_050 Hb_014068_050 Hb_002026_060--Hb_014068_050 Hb_000634_070 Hb_000634_070 Hb_002026_060--Hb_000634_070 Hb_000976_290 Hb_000976_290 Hb_002026_060--Hb_000976_290 Hb_000809_090 Hb_000809_090 Hb_002026_060--Hb_000809_090 Hb_002097_200 Hb_002097_200 Hb_002026_060--Hb_002097_200 Hb_007409_040 Hb_007409_040 Hb_005188_030--Hb_007409_040 Hb_003078_020 Hb_003078_020 Hb_005188_030--Hb_003078_020 Hb_000931_020 Hb_000931_020 Hb_005188_030--Hb_000931_020 Hb_000802_090 Hb_000802_090 Hb_005188_030--Hb_000802_090 Hb_000815_240 Hb_000815_240 Hb_005188_030--Hb_000815_240 Hb_006441_020 Hb_006441_020 Hb_005188_030--Hb_006441_020 Hb_000116_210 Hb_000116_210 Hb_023344_060--Hb_000116_210 Hb_012286_090 Hb_012286_090 Hb_023344_060--Hb_012286_090 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_000805_190 Hb_000805_190 Hb_023344_060--Hb_000805_190 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_000384_110--Hb_005188_030 Hb_000384_110--Hb_000931_020 Hb_018118_030 Hb_018118_030 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_000007_180 Hb_000007_180 Hb_000665_020--Hb_000007_180 Hb_122408_010 Hb_122408_010 Hb_000665_020--Hb_122408_010 Hb_092408_010 Hb_092408_010 Hb_000665_020--Hb_092408_010 Hb_000665_020--Hb_000384_110 Hb_002774_140 Hb_002774_140 Hb_000665_020--Hb_002774_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0196 99.9468 22.2813 58.8055 32.4404 14.5637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0128 10.6546 56.4839 29.607 1.45183

CAGE analysis