Hb_026198_030

Information

Type -
Description -
Location Contig26198: 82736-90380
Sequence    

Annotation

kegg
ID tcc:TCM_036375
description ATP-binding casette family G25
nr
ID XP_012065776.1
description PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
swissprot
ID Q84TH5
description ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1
trembl
ID A0A067LFS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25470 PE=4 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27375: 89681-89830 , PASA_asmbl_27376: 90024-90316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_030 0.0 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
2 Hb_000398_050 0.2009814343 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
3 Hb_000028_500 0.2021830058 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_023344_070 0.2148023252 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_000062_640 0.2262211808 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
6 Hb_000103_420 0.233498142 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
7 Hb_002876_160 0.23795995 - - sucrose transporter 1 [Hevea brasiliensis]
8 Hb_000103_190 0.2431341068 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
9 Hb_023344_060 0.2465629528 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
10 Hb_139139_010 0.2484880033 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_005539_260 0.2501553157 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
12 Hb_004724_330 0.2504485093 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
13 Hb_014720_050 0.2506150162 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
14 Hb_002875_070 0.2513953561 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_000836_600 0.2534368124 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
16 Hb_000336_190 0.255273131 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
17 Hb_004631_010 0.2553258357 - - Early nodulin 20 precursor, putative [Ricinus communis]
18 Hb_001133_010 0.2560277196 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000554_030 0.2577749452 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
20 Hb_001123_250 0.2582724529 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]

Gene co-expression network

sample Hb_026198_030 Hb_026198_030 Hb_000398_050 Hb_000398_050 Hb_026198_030--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_026198_030--Hb_000028_500 Hb_023344_070 Hb_023344_070 Hb_026198_030--Hb_023344_070 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_002876_160 Hb_002876_160 Hb_026198_030--Hb_002876_160 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030 Hb_000398_050--Hb_023344_070 Hb_003159_150 Hb_003159_150 Hb_000028_500--Hb_003159_150 Hb_002893_030 Hb_002893_030 Hb_000028_500--Hb_002893_030 Hb_002000_090 Hb_002000_090 Hb_000028_500--Hb_002000_090 Hb_005539_260 Hb_005539_260 Hb_000028_500--Hb_005539_260 Hb_000384_110 Hb_000384_110 Hb_023344_070--Hb_000384_110 Hb_023344_070--Hb_002876_160 Hb_018118_030 Hb_018118_030 Hb_023344_070--Hb_018118_030 Hb_001123_240 Hb_001123_240 Hb_023344_070--Hb_001123_240 Hb_000028_340 Hb_000028_340 Hb_000062_640--Hb_000028_340 Hb_005054_170 Hb_005054_170 Hb_000062_640--Hb_005054_170 Hb_003470_050 Hb_003470_050 Hb_000062_640--Hb_003470_050 Hb_001446_060 Hb_001446_060 Hb_000062_640--Hb_001446_060 Hb_002289_150 Hb_002289_150 Hb_000062_640--Hb_002289_150 Hb_005489_150 Hb_005489_150 Hb_000062_640--Hb_005489_150 Hb_001133_010 Hb_001133_010 Hb_000103_420--Hb_001133_010 Hb_002875_070 Hb_002875_070 Hb_000103_420--Hb_002875_070 Hb_000836_600 Hb_000836_600 Hb_000103_420--Hb_000836_600 Hb_000336_190 Hb_000336_190 Hb_000103_420--Hb_000336_190 Hb_143766_030 Hb_143766_030 Hb_000103_420--Hb_143766_030 Hb_006054_030 Hb_006054_030 Hb_000103_420--Hb_006054_030 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492981 0.744519 0.104397 0.810321 0.0948742 0.0275795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224068 0.0176304 0.401262 0.119233 0.0745329

CAGE analysis