Hb_000545_160

Information

Type -
Description -
Location Contig545: 325807-329614
Sequence    

Annotation

kegg
ID tcc:TCM_013381
description hypothetical protein
nr
ID XP_012075840.1
description PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FWX4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_013381 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000545_160 0.0 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
2 Hb_001235_090 0.1392508163 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
3 Hb_176472_010 0.2587723387 - - BnaC01g33060D [Brassica napus]
4 Hb_000191_010 0.2683417027 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_117807_030 0.2779870033 - - Protein MCM10 [Gossypium arboreum]
6 Hb_000120_690 0.2977594426 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
7 Hb_000398_050 0.3166894254 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
8 Hb_015970_010 0.3239862955 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_003055_170 0.331237932 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
10 Hb_000980_070 0.333739858 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
11 Hb_051055_010 0.3346697833 - - -
12 Hb_003760_040 0.3459365466 - - organic anion transporter, putative [Ricinus communis]
13 Hb_001208_010 0.3480579435 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
14 Hb_000192_110 0.3529222236 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
15 Hb_000554_030 0.3533578094 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_007975_040 0.3548210091 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
17 Hb_006907_090 0.3620388826 - - -
18 Hb_020712_050 0.3664171885 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
19 Hb_000440_030 0.3666108597 - - 50 kDa protein [Hevea brasiliensis]
20 Hb_001462_020 0.3701253161 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000545_160 Hb_000545_160 Hb_001235_090 Hb_001235_090 Hb_000545_160--Hb_001235_090 Hb_176472_010 Hb_176472_010 Hb_000545_160--Hb_176472_010 Hb_000191_010 Hb_000191_010 Hb_000545_160--Hb_000191_010 Hb_117807_030 Hb_117807_030 Hb_000545_160--Hb_117807_030 Hb_000120_690 Hb_000120_690 Hb_000545_160--Hb_000120_690 Hb_000398_050 Hb_000398_050 Hb_000545_160--Hb_000398_050 Hb_001235_090--Hb_000120_690 Hb_001235_090--Hb_176472_010 Hb_001235_090--Hb_117807_030 Hb_006907_090 Hb_006907_090 Hb_001235_090--Hb_006907_090 Hb_007975_040 Hb_007975_040 Hb_001235_090--Hb_007975_040 Hb_176472_010--Hb_117807_030 Hb_034905_010 Hb_034905_010 Hb_176472_010--Hb_034905_010 Hb_176472_010--Hb_000120_690 Hb_036537_010 Hb_036537_010 Hb_176472_010--Hb_036537_010 Hb_000191_010--Hb_000398_050 Hb_026198_030 Hb_026198_030 Hb_000191_010--Hb_026198_030 Hb_000191_010--Hb_117807_030 Hb_000554_030 Hb_000554_030 Hb_000191_010--Hb_000554_030 Hb_000028_500 Hb_000028_500 Hb_000191_010--Hb_000028_500 Hb_117807_030--Hb_034905_010 Hb_117807_030--Hb_000120_690 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_000398_050--Hb_000028_500 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000398_050--Hb_000554_030 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0117183 0 0.0208652 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0476072 0.0101292 0

CAGE analysis