Hb_000192_110

Information

Type -
Description -
Location Contig192: 118869-129863
Sequence    

Annotation

kegg
ID sly:104645365
description uncharacterized LOC104645365
nr
ID XP_012088177.1
description PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000192_110 0.0 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
2 Hb_015970_010 0.227495778 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_003055_170 0.2728712083 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
4 Hb_011437_030 0.2768071625 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
5 Hb_026048_060 0.2822381601 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_001976_080 0.2971223505 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
7 Hb_000000_100 0.3208597624 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
8 Hb_096671_010 0.327323816 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
9 Hb_000904_100 0.327339525 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
10 Hb_001462_020 0.3282936317 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_071586_010 0.3283143126 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
12 Hb_000010_100 0.3352182718 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
13 Hb_008511_010 0.3375151617 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
14 Hb_181909_010 0.3378592535 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
15 Hb_000190_240 0.3382842556 - - unnamed protein product [Coffea canephora]
16 Hb_000304_060 0.3425489948 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
17 Hb_138652_010 0.3488506719 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
18 Hb_000144_140 0.3514976694 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
19 Hb_000042_190 0.3520688488 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000545_160 0.3529222236 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]

Gene co-expression network

sample Hb_000192_110 Hb_000192_110 Hb_015970_010 Hb_015970_010 Hb_000192_110--Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_000192_110--Hb_003055_170 Hb_011437_030 Hb_011437_030 Hb_000192_110--Hb_011437_030 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_001976_080 Hb_001976_080 Hb_000192_110--Hb_001976_080 Hb_000000_100 Hb_000000_100 Hb_000192_110--Hb_000000_100 Hb_015970_010--Hb_003055_170 Hb_015970_010--Hb_011437_030 Hb_005699_080 Hb_005699_080 Hb_015970_010--Hb_005699_080 Hb_015970_010--Hb_001976_080 Hb_007380_010 Hb_007380_010 Hb_015970_010--Hb_007380_010 Hb_003055_170--Hb_011437_030 Hb_002660_060 Hb_002660_060 Hb_003055_170--Hb_002660_060 Hb_026048_020 Hb_026048_020 Hb_003055_170--Hb_026048_020 Hb_008438_010 Hb_008438_010 Hb_003055_170--Hb_008438_010 Hb_000302_090 Hb_000302_090 Hb_011437_030--Hb_000302_090 Hb_003992_230 Hb_003992_230 Hb_011437_030--Hb_003992_230 Hb_011437_030--Hb_005699_080 Hb_000010_100 Hb_000010_100 Hb_026048_060--Hb_000010_100 Hb_000876_040 Hb_000876_040 Hb_026048_060--Hb_000876_040 Hb_001956_030 Hb_001956_030 Hb_026048_060--Hb_001956_030 Hb_096671_010 Hb_096671_010 Hb_026048_060--Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_026048_060--Hb_000904_100 Hb_001976_080--Hb_000000_100 Hb_008511_010 Hb_008511_010 Hb_001976_080--Hb_008511_010 Hb_000304_060 Hb_000304_060 Hb_001976_080--Hb_000304_060 Hb_108886_010 Hb_108886_010 Hb_001976_080--Hb_108886_010 Hb_004103_030 Hb_004103_030 Hb_000000_100--Hb_004103_030 Hb_000000_100--Hb_000304_060 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_000000_100--Hb_008511_010 Hb_000251_090 Hb_000251_090 Hb_000000_100--Hb_000251_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0402034 0.0334545 0 0.0155894 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.133793 0.058071 0

CAGE analysis