Hb_000904_100

Information

Type -
Description -
Location Contig904: 168915-170363
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID KDP40404.1
description hypothetical protein JCGZ_03883 [Jatropha curcas]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID K7KWX1
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein JCGZ_03883

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000904_100 0.0 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
2 Hb_096671_010 0.0021310726 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_001462_020 0.0277729754 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
4 Hb_071586_010 0.0281926587 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
5 Hb_001956_030 0.2269317249 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
6 Hb_089173_010 0.2285147269 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
7 Hb_003777_010 0.2585329479 - - -
8 Hb_125847_010 0.2790496623 - - -
9 Hb_000430_010 0.2793185229 - - -
10 Hb_162126_010 0.2807646693 - - -
11 Hb_001221_370 0.2843969508 - - hypothetical protein MIMGU_mgv1a020064mg, partial [Erythranthe guttata]
12 Hb_168311_010 0.2849771401 - - -
13 Hb_005285_010 0.2876963037 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
14 Hb_000139_440 0.2901969961 - - unnamed protein product [Coffea canephora]
15 Hb_026048_060 0.2902870517 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_000590_020 0.2932168546 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
17 Hb_008246_050 0.2936745009 - - -
18 Hb_005799_040 0.2936882531 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
19 Hb_047040_010 0.2946134216 - - integrase [Gossypium herbaceum]
20 Hb_048874_010 0.2956125085 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]

Gene co-expression network

sample Hb_000904_100 Hb_000904_100 Hb_096671_010 Hb_096671_010 Hb_000904_100--Hb_096671_010 Hb_001462_020 Hb_001462_020 Hb_000904_100--Hb_001462_020 Hb_071586_010 Hb_071586_010 Hb_000904_100--Hb_071586_010 Hb_001956_030 Hb_001956_030 Hb_000904_100--Hb_001956_030 Hb_089173_010 Hb_089173_010 Hb_000904_100--Hb_089173_010 Hb_003777_010 Hb_003777_010 Hb_000904_100--Hb_003777_010 Hb_096671_010--Hb_001462_020 Hb_096671_010--Hb_071586_010 Hb_096671_010--Hb_001956_030 Hb_096671_010--Hb_089173_010 Hb_096671_010--Hb_003777_010 Hb_001462_020--Hb_071586_010 Hb_001462_020--Hb_003777_010 Hb_001462_020--Hb_001956_030 Hb_001462_020--Hb_089173_010 Hb_071586_010--Hb_003777_010 Hb_071586_010--Hb_001956_030 Hb_071586_010--Hb_089173_010 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_001956_030--Hb_169574_010 Hb_001956_030--Hb_089173_010 Hb_048874_010 Hb_048874_010 Hb_001956_030--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_001956_030--Hb_005799_040 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_089173_010--Hb_005799_040 Hb_089173_010--Hb_048874_010 Hb_089173_010--Hb_169574_010 Hb_005045_040 Hb_005045_040 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_006478_170 Hb_006478_170 Hb_003777_010--Hb_006478_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0118121 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0479741 0.0204222 0

CAGE analysis