Hb_003055_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig3055: 171313-172889
Sequence    

Annotation

kegg
ID rcu:RCOM_0934830
description transcription factor, putative
nr
ID XP_012091551.1
description PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID R4NHL8
description NAC transcription factor 029 OS=Jatropha curcas GN=JCGZ_21394 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_170 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
2 Hb_015970_010 0.1950603746 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_011437_030 0.2213780295 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
4 Hb_002660_060 0.2606167633 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
5 Hb_000192_110 0.2728712083 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
6 Hb_026048_020 0.2857591643 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
7 Hb_008438_010 0.3071534536 - - PREDICTED: uncharacterized protein LOC104245771 [Nicotiana sylvestris]
8 Hb_002774_140 0.3072985702 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_001976_080 0.3130463691 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
10 Hb_000554_030 0.3130623529 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
11 Hb_007157_030 0.318592394 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
12 Hb_005699_080 0.3294317054 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
13 Hb_000256_060 0.3311531087 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
14 Hb_000545_160 0.331237932 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
15 Hb_000191_010 0.3330724491 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000126_110 0.3337650039 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
17 Hb_006446_010 0.3358007179 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_004032_420 0.3382831855 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
19 Hb_012371_010 0.3385102796 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
20 Hb_001103_020 0.3395206789 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]

Gene co-expression network

sample Hb_003055_170 Hb_003055_170 Hb_015970_010 Hb_015970_010 Hb_003055_170--Hb_015970_010 Hb_011437_030 Hb_011437_030 Hb_003055_170--Hb_011437_030 Hb_002660_060 Hb_002660_060 Hb_003055_170--Hb_002660_060 Hb_000192_110 Hb_000192_110 Hb_003055_170--Hb_000192_110 Hb_026048_020 Hb_026048_020 Hb_003055_170--Hb_026048_020 Hb_008438_010 Hb_008438_010 Hb_003055_170--Hb_008438_010 Hb_015970_010--Hb_011437_030 Hb_015970_010--Hb_000192_110 Hb_005699_080 Hb_005699_080 Hb_015970_010--Hb_005699_080 Hb_001976_080 Hb_001976_080 Hb_015970_010--Hb_001976_080 Hb_007380_010 Hb_007380_010 Hb_015970_010--Hb_007380_010 Hb_000302_090 Hb_000302_090 Hb_011437_030--Hb_000302_090 Hb_003992_230 Hb_003992_230 Hb_011437_030--Hb_003992_230 Hb_011437_030--Hb_005699_080 Hb_011437_030--Hb_000192_110 Hb_002805_020 Hb_002805_020 Hb_002660_060--Hb_002805_020 Hb_000671_160 Hb_000671_160 Hb_002660_060--Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_000192_110--Hb_001976_080 Hb_000000_100 Hb_000000_100 Hb_000192_110--Hb_000000_100 Hb_002110_020 Hb_002110_020 Hb_026048_020--Hb_002110_020 Hb_000239_020 Hb_000239_020 Hb_026048_020--Hb_000239_020 Hb_031862_130 Hb_031862_130 Hb_026048_020--Hb_031862_130 Hb_001930_040 Hb_001930_040 Hb_026048_020--Hb_001930_040 Hb_000069_170 Hb_000069_170 Hb_026048_020--Hb_000069_170 Hb_004586_210 Hb_004586_210 Hb_026048_020--Hb_004586_210 Hb_007157_030 Hb_007157_030 Hb_008438_010--Hb_007157_030 Hb_001477_150 Hb_001477_150 Hb_008438_010--Hb_001477_150 Hb_012371_010 Hb_012371_010 Hb_008438_010--Hb_012371_010 Hb_008438_010--Hb_002660_060 Hb_002046_070 Hb_002046_070 Hb_008438_010--Hb_002046_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0738212 0.244816 0.011604 0.126766 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0529562 0.34733 0.169261 0

CAGE analysis