Hb_001930_040

Information

Type -
Description -
Location Contig1930: 39505-40641
Sequence    

Annotation

kegg
ID bvg:104891831
description serine acetyltransferase 1, chloroplastic-like
nr
ID XP_010675897.1
description PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
swissprot
ID Q42538
description Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1
trembl
ID A0A087H933
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G140000 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine acetyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19283: 40114-40883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_040 0.0 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
2 Hb_000239_020 0.1854662505 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
3 Hb_008948_040 0.198285559 - - grr1, plant, putative [Ricinus communis]
4 Hb_005060_020 0.2025456927 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
5 Hb_026048_020 0.2176831845 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
6 Hb_005162_100 0.2212507007 - - ATP binding protein, putative [Ricinus communis]
7 Hb_005489_100 0.2234536935 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000130_110 0.2243073399 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
9 Hb_000748_130 0.2243792152 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
10 Hb_000010_410 0.2294931189 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
11 Hb_003972_080 0.2311415 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
12 Hb_008760_010 0.2319667405 - - berberine bridge enzyme [Hevea brasiliensis]
13 Hb_005224_010 0.2333127498 - - glycine-rich protein [Bruguiera gymnorhiza]
14 Hb_012760_070 0.235232051 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_000019_070 0.2365804847 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_027393_030 0.2421082593 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
17 Hb_005542_060 0.2457415503 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_083380_010 0.2458739579 - - -
19 Hb_000059_010 0.2467091908 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_002078_440 0.2479123068 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001930_040 Hb_001930_040 Hb_000239_020 Hb_000239_020 Hb_001930_040--Hb_000239_020 Hb_008948_040 Hb_008948_040 Hb_001930_040--Hb_008948_040 Hb_005060_020 Hb_005060_020 Hb_001930_040--Hb_005060_020 Hb_026048_020 Hb_026048_020 Hb_001930_040--Hb_026048_020 Hb_005162_100 Hb_005162_100 Hb_001930_040--Hb_005162_100 Hb_005489_100 Hb_005489_100 Hb_001930_040--Hb_005489_100 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060 Hb_168319_030 Hb_168319_030 Hb_008948_040--Hb_168319_030 Hb_000019_060 Hb_000019_060 Hb_008948_040--Hb_000019_060 Hb_000366_090 Hb_000366_090 Hb_008948_040--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_008948_040--Hb_004375_150 Hb_012799_100 Hb_012799_100 Hb_008948_040--Hb_012799_100 Hb_027472_170 Hb_027472_170 Hb_008948_040--Hb_027472_170 Hb_000010_410 Hb_000010_410 Hb_005060_020--Hb_000010_410 Hb_029510_040 Hb_029510_040 Hb_005060_020--Hb_029510_040 Hb_009005_050 Hb_009005_050 Hb_005060_020--Hb_009005_050 Hb_001189_050 Hb_001189_050 Hb_005060_020--Hb_001189_050 Hb_001053_150 Hb_001053_150 Hb_005060_020--Hb_001053_150 Hb_005060_020--Hb_012799_100 Hb_002110_020 Hb_002110_020 Hb_026048_020--Hb_002110_020 Hb_026048_020--Hb_000239_020 Hb_031862_130 Hb_031862_130 Hb_026048_020--Hb_031862_130 Hb_000069_170 Hb_000069_170 Hb_026048_020--Hb_000069_170 Hb_004586_210 Hb_004586_210 Hb_026048_020--Hb_004586_210 Hb_001102_210 Hb_001102_210 Hb_005162_100--Hb_001102_210 Hb_000059_010 Hb_000059_010 Hb_005162_100--Hb_000059_010 Hb_000815_290 Hb_000815_290 Hb_005162_100--Hb_000815_290 Hb_001123_100 Hb_001123_100 Hb_005162_100--Hb_001123_100 Hb_083380_010 Hb_083380_010 Hb_005162_100--Hb_083380_010 Hb_005356_040 Hb_005356_040 Hb_005162_100--Hb_005356_040 Hb_003994_190 Hb_003994_190 Hb_005489_100--Hb_003994_190 Hb_005224_010 Hb_005224_010 Hb_005489_100--Hb_005224_010 Hb_000327_220 Hb_000327_220 Hb_005489_100--Hb_000327_220 Hb_001159_080 Hb_001159_080 Hb_005489_100--Hb_001159_080 Hb_002239_060 Hb_002239_060 Hb_005489_100--Hb_002239_060 Hb_000130_110 Hb_000130_110 Hb_005489_100--Hb_000130_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.648456 2.78142 1.10659 4.84835 0.825974 1.57677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.562767 6.70805 13.3273 3.86428 0.913256

CAGE analysis