Hb_015970_010

Information

Type -
Description -
Location Contig15970: 6234-8870
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023432mg
description hypothetical protein
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015970_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_003055_170 0.1950603746 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
3 Hb_011437_030 0.2177513553 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
4 Hb_000192_110 0.227495778 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
5 Hb_005699_080 0.2882659067 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
6 Hb_001976_080 0.2992477271 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
7 Hb_007380_010 0.3205483305 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
8 Hb_000191_010 0.3223823239 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000545_160 0.3239862955 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
10 Hb_000256_060 0.3313542624 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
11 Hb_000000_100 0.3469658256 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
12 Hb_000190_100 0.3527234 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
13 Hb_002774_140 0.3529837095 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_001235_090 0.3578922137 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
15 Hb_000398_050 0.3615416929 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
16 Hb_026048_020 0.3619182947 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
17 Hb_181909_010 0.3648149971 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
18 Hb_000554_030 0.3770765961 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
19 Hb_007885_090 0.3784663898 - - hypothetical protein POPTR_0001s08950g [Populus trichocarpa]
20 Hb_006478_170 0.3800193819 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]

Gene co-expression network

sample Hb_015970_010 Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_015970_010--Hb_003055_170 Hb_011437_030 Hb_011437_030 Hb_015970_010--Hb_011437_030 Hb_000192_110 Hb_000192_110 Hb_015970_010--Hb_000192_110 Hb_005699_080 Hb_005699_080 Hb_015970_010--Hb_005699_080 Hb_001976_080 Hb_001976_080 Hb_015970_010--Hb_001976_080 Hb_007380_010 Hb_007380_010 Hb_015970_010--Hb_007380_010 Hb_003055_170--Hb_011437_030 Hb_002660_060 Hb_002660_060 Hb_003055_170--Hb_002660_060 Hb_003055_170--Hb_000192_110 Hb_026048_020 Hb_026048_020 Hb_003055_170--Hb_026048_020 Hb_008438_010 Hb_008438_010 Hb_003055_170--Hb_008438_010 Hb_000302_090 Hb_000302_090 Hb_011437_030--Hb_000302_090 Hb_003992_230 Hb_003992_230 Hb_011437_030--Hb_003992_230 Hb_011437_030--Hb_005699_080 Hb_011437_030--Hb_000192_110 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_000192_110--Hb_001976_080 Hb_000000_100 Hb_000000_100 Hb_000192_110--Hb_000000_100 Hb_012753_080 Hb_012753_080 Hb_005699_080--Hb_012753_080 Hb_000304_060 Hb_000304_060 Hb_005699_080--Hb_000304_060 Hb_000190_100 Hb_000190_100 Hb_005699_080--Hb_000190_100 Hb_163837_010 Hb_163837_010 Hb_005699_080--Hb_163837_010 Hb_001976_080--Hb_000000_100 Hb_008511_010 Hb_008511_010 Hb_001976_080--Hb_008511_010 Hb_001976_080--Hb_000304_060 Hb_108886_010 Hb_108886_010 Hb_001976_080--Hb_108886_010 Hb_181909_010 Hb_181909_010 Hb_007380_010--Hb_181909_010 Hb_007380_010--Hb_000190_100 Hb_132915_010 Hb_132915_010 Hb_007380_010--Hb_132915_010 Hb_062585_010 Hb_062585_010 Hb_007380_010--Hb_062585_010 Hb_007537_010 Hb_007537_010 Hb_007380_010--Hb_007537_010 Hb_000567_080 Hb_000567_080 Hb_007380_010--Hb_000567_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150956 0.0342119 0 0.0176319 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0410459 0.0173508 0

CAGE analysis