Hb_181909_010

Information

Type -
Description -
Location Contig181909: 2906-7442
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012468708.1
description PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181909_010 0.0 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
2 Hb_132915_010 0.2072527139 - - PREDICTED: uncharacterized protein LOC103700431, partial [Phoenix dactylifera]
3 Hb_007380_010 0.2465027359 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
4 Hb_008511_010 0.2743431323 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
5 Hb_000190_100 0.3238701711 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
6 Hb_000192_110 0.3378592535 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
7 Hb_007537_010 0.3394863126 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000000_100 0.3402910346 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
9 Hb_001976_080 0.3444118679 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
10 Hb_138652_010 0.3527357647 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
11 Hb_005699_080 0.3548000244 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
12 Hb_000252_030 0.355745209 - - Heme-binding protein, putative [Ricinus communis]
13 Hb_017434_060 0.3626171938 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
14 Hb_000500_140 0.3631752011 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
15 Hb_015970_010 0.3648149971 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_012753_080 0.3649628687 - - -
17 Hb_007513_010 0.3658705539 - - -
18 Hb_000363_440 0.3693994362 - - -
19 Hb_001008_040 0.3715087007 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
20 Hb_054328_010 0.3760112241 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]

Gene co-expression network

sample Hb_181909_010 Hb_181909_010 Hb_132915_010 Hb_132915_010 Hb_181909_010--Hb_132915_010 Hb_007380_010 Hb_007380_010 Hb_181909_010--Hb_007380_010 Hb_008511_010 Hb_008511_010 Hb_181909_010--Hb_008511_010 Hb_000190_100 Hb_000190_100 Hb_181909_010--Hb_000190_100 Hb_000192_110 Hb_000192_110 Hb_181909_010--Hb_000192_110 Hb_007537_010 Hb_007537_010 Hb_181909_010--Hb_007537_010 Hb_132915_010--Hb_007380_010 Hb_062585_010 Hb_062585_010 Hb_132915_010--Hb_062585_010 Hb_000252_030 Hb_000252_030 Hb_132915_010--Hb_000252_030 Hb_000347_500 Hb_000347_500 Hb_132915_010--Hb_000347_500 Hb_130788_010 Hb_130788_010 Hb_132915_010--Hb_130788_010 Hb_007380_010--Hb_000190_100 Hb_007380_010--Hb_062585_010 Hb_007380_010--Hb_007537_010 Hb_000567_080 Hb_000567_080 Hb_007380_010--Hb_000567_080 Hb_000000_100 Hb_000000_100 Hb_008511_010--Hb_000000_100 Hb_001976_080 Hb_001976_080 Hb_008511_010--Hb_001976_080 Hb_055101_010 Hb_055101_010 Hb_008511_010--Hb_055101_010 Hb_005439_040 Hb_005439_040 Hb_008511_010--Hb_005439_040 Hb_000637_120 Hb_000637_120 Hb_008511_010--Hb_000637_120 Hb_000152_020 Hb_000152_020 Hb_000190_100--Hb_000152_020 Hb_017434_060 Hb_017434_060 Hb_000190_100--Hb_017434_060 Hb_005841_080 Hb_005841_080 Hb_000190_100--Hb_005841_080 Hb_000215_410 Hb_000215_410 Hb_000190_100--Hb_000215_410 Hb_000140_410 Hb_000140_410 Hb_000190_100--Hb_000140_410 Hb_015970_010 Hb_015970_010 Hb_000192_110--Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_000192_110--Hb_003055_170 Hb_011437_030 Hb_011437_030 Hb_000192_110--Hb_011437_030 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_000192_110--Hb_001976_080 Hb_000192_110--Hb_000000_100 Hb_108886_010 Hb_108886_010 Hb_007537_010--Hb_108886_010 Hb_001338_060 Hb_001338_060 Hb_007537_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_007537_010--Hb_005045_040 Hb_007537_010--Hb_000567_080 Hb_007537_010--Hb_001976_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0566396 0.0470854 0 0 0 0.0166017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0629711 0.0272211 0

CAGE analysis