Hb_007537_010

Information

Type -
Description -
Location Contig7537: 27500-30202
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007537_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_108886_010 0.3060850501 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001338_060 0.3066941429 - - -
4 Hb_007380_010 0.3144736848 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
5 Hb_005045_040 0.3155546742 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
6 Hb_000567_080 0.3320148387 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
7 Hb_001976_080 0.3325208027 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
8 Hb_004032_420 0.3357288724 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
9 Hb_181909_010 0.3394863126 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_003777_010 0.3435813464 - - -
11 Hb_002035_070 0.3466831583 - - hypothetical protein CICLE_v10033569mg [Citrus clementina]
12 Hb_122911_020 0.3565298544 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_001545_030 0.360188599 - - -
14 Hb_008225_070 0.3606082711 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000220_140 0.363913454 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
16 Hb_001545_190 0.3659246165 - - hypothetical protein VITISV_012031 [Vitis vinifera]
17 Hb_000252_030 0.369399588 - - Heme-binding protein, putative [Ricinus communis]
18 Hb_012753_080 0.3742812167 - - -
19 Hb_004296_030 0.3764154727 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
20 Hb_132915_010 0.3789313509 - - PREDICTED: uncharacterized protein LOC103700431, partial [Phoenix dactylifera]

Gene co-expression network

sample Hb_007537_010 Hb_007537_010 Hb_108886_010 Hb_108886_010 Hb_007537_010--Hb_108886_010 Hb_001338_060 Hb_001338_060 Hb_007537_010--Hb_001338_060 Hb_007380_010 Hb_007380_010 Hb_007537_010--Hb_007380_010 Hb_005045_040 Hb_005045_040 Hb_007537_010--Hb_005045_040 Hb_000567_080 Hb_000567_080 Hb_007537_010--Hb_000567_080 Hb_001976_080 Hb_001976_080 Hb_007537_010--Hb_001976_080 Hb_108886_010--Hb_001338_060 Hb_108886_010--Hb_005045_040 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_021419_050 Hb_021419_050 Hb_108886_010--Hb_021419_050 Hb_001338_060--Hb_005045_040 Hb_001338_060--Hb_003777_010 Hb_001545_030 Hb_001545_030 Hb_001338_060--Hb_001545_030 Hb_071586_010 Hb_071586_010 Hb_001338_060--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_001338_060--Hb_001462_020 Hb_181909_010 Hb_181909_010 Hb_007380_010--Hb_181909_010 Hb_000190_100 Hb_000190_100 Hb_007380_010--Hb_000190_100 Hb_132915_010 Hb_132915_010 Hb_007380_010--Hb_132915_010 Hb_062585_010 Hb_062585_010 Hb_007380_010--Hb_062585_010 Hb_007380_010--Hb_000567_080 Hb_005045_040--Hb_003777_010 Hb_005045_040--Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_005045_040--Hb_004296_030 Hb_006478_170 Hb_006478_170 Hb_005045_040--Hb_006478_170 Hb_000215_410 Hb_000215_410 Hb_000567_080--Hb_000215_410 Hb_129204_060 Hb_129204_060 Hb_000567_080--Hb_129204_060 Hb_004032_420 Hb_004032_420 Hb_000567_080--Hb_004032_420 Hb_002235_240 Hb_002235_240 Hb_000567_080--Hb_002235_240 Hb_005841_080 Hb_005841_080 Hb_000567_080--Hb_005841_080 Hb_131956_010 Hb_131956_010 Hb_000567_080--Hb_131956_010 Hb_000000_100 Hb_000000_100 Hb_001976_080--Hb_000000_100 Hb_008511_010 Hb_008511_010 Hb_001976_080--Hb_008511_010 Hb_000304_060 Hb_000304_060 Hb_001976_080--Hb_000304_060 Hb_000192_110 Hb_000192_110 Hb_001976_080--Hb_000192_110 Hb_015970_010 Hb_015970_010 Hb_001976_080--Hb_015970_010 Hb_001976_080--Hb_108886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00789048 0.0624493 0 0 0 0.00689776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0268589 0.00559677 0

CAGE analysis