Hb_000010_100

Information

Type -
Description -
Location Contig10: 154891-166728
Sequence    

Annotation

kegg
ID cic:CICLE_v10024390mg
description hypothetical protein
nr
ID XP_002323082.2
description hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
swissprot
ID Q6TBX7
description Carotene epsilon-monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=CYP97C1 PE=1 SV=1
trembl
ID B9IGU1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s14440g PE=4 SV=2
Gene Ontology
ID GO:0004497
description cytochrome p450 71a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00139: 155809-156302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_100 0.0 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
2 Hb_026048_060 0.2337962531 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_012586_030 0.246123212 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
4 Hb_001143_260 0.2853343265 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
5 Hb_002513_050 0.2863880745 - - hypothetical protein F383_14794 [Gossypium arboreum]
6 Hb_000184_200 0.301943719 - - -
7 Hb_003799_020 0.3039404373 - - hypothetical protein VITISV_003261 [Vitis vinifera]
8 Hb_000876_040 0.3094515778 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
9 Hb_043623_020 0.3155173887 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
10 Hb_005020_010 0.3175648811 - - -
11 Hb_000304_060 0.3198913951 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
12 Hb_000904_100 0.3225726338 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
13 Hb_096671_010 0.3236248966 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_001462_020 0.3271949829 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
15 Hb_071586_010 0.3277474225 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
16 Hb_007177_010 0.3288548979 - - -
17 Hb_000964_060 0.3314216236 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
18 Hb_000192_110 0.3352182718 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
19 Hb_000213_080 0.337167394 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
20 Hb_003025_070 0.3464237612 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]

Gene co-expression network

sample Hb_000010_100 Hb_000010_100 Hb_026048_060 Hb_026048_060 Hb_000010_100--Hb_026048_060 Hb_012586_030 Hb_012586_030 Hb_000010_100--Hb_012586_030 Hb_001143_260 Hb_001143_260 Hb_000010_100--Hb_001143_260 Hb_002513_050 Hb_002513_050 Hb_000010_100--Hb_002513_050 Hb_000184_200 Hb_000184_200 Hb_000010_100--Hb_000184_200 Hb_003799_020 Hb_003799_020 Hb_000010_100--Hb_003799_020 Hb_000192_110 Hb_000192_110 Hb_026048_060--Hb_000192_110 Hb_000876_040 Hb_000876_040 Hb_026048_060--Hb_000876_040 Hb_001956_030 Hb_001956_030 Hb_026048_060--Hb_001956_030 Hb_096671_010 Hb_096671_010 Hb_026048_060--Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_026048_060--Hb_000904_100 Hb_006355_050 Hb_006355_050 Hb_012586_030--Hb_006355_050 Hb_001817_030 Hb_001817_030 Hb_012586_030--Hb_001817_030 Hb_001342_050 Hb_001342_050 Hb_012586_030--Hb_001342_050 Hb_007177_010 Hb_007177_010 Hb_012586_030--Hb_007177_010 Hb_061637_010 Hb_061637_010 Hb_012586_030--Hb_061637_010 Hb_043623_020 Hb_043623_020 Hb_001143_260--Hb_043623_020 Hb_001143_260--Hb_002513_050 Hb_001143_260--Hb_000876_040 Hb_001221_280 Hb_001221_280 Hb_001143_260--Hb_001221_280 Hb_001143_260--Hb_000184_200 Hb_009615_080 Hb_009615_080 Hb_001143_260--Hb_009615_080 Hb_002513_050--Hb_000184_200 Hb_002513_050--Hb_000876_040 Hb_004785_010 Hb_004785_010 Hb_002513_050--Hb_004785_010 Hb_000174_190 Hb_000174_190 Hb_002513_050--Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_002513_050--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_002513_050--Hb_083493_050 Hb_000201_020 Hb_000201_020 Hb_000184_200--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_000184_200--Hb_000971_060 Hb_001545_250 Hb_001545_250 Hb_000184_200--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000184_200--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000184_200--Hb_010760_010 Hb_003747_110 Hb_003747_110 Hb_003799_020--Hb_003747_110 Hb_000302_210 Hb_000302_210 Hb_003799_020--Hb_000302_210 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_006788_080 Hb_006788_080 Hb_003799_020--Hb_006788_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0231382 0.034479 0.0353176 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.273781 0.0412524 0

CAGE analysis