Hb_001817_030

Information

Type -
Description -
Location Contig1817: 24907-28367
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00650g
description POPTRDRAFT_578124; CCR4-NOT transcription complex family protein
nr
ID XP_012065990.1
description PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
swissprot
ID Q9FMS6
description Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1
trembl
ID A0A067L3Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26675 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_030 0.0 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
2 Hb_003436_030 0.2309037187 - - plant origin recognition complex subunit, putative [Ricinus communis]
3 Hb_012586_030 0.3029684868 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
4 Hb_177179_010 0.3145190807 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
5 Hb_035687_010 0.3169173776 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_002289_130 0.3332278178 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
7 Hb_046054_010 0.3365663061 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_001242_090 0.3375795744 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
9 Hb_001545_210 0.3394351812 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
10 Hb_127704_010 0.3458625913 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001106_050 0.349091574 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_004881_100 0.3492964289 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
13 Hb_001342_050 0.3569791669 - - -
14 Hb_138585_020 0.3589314302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006280_010 0.3608800591 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
16 Hb_003688_170 0.3632689329 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
17 Hb_012424_010 0.3653180978 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_000213_080 0.3656288165 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
19 Hb_004460_010 0.3668114649 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
20 Hb_000504_130 0.3708411178 - - GPI transamidase component family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001817_030 Hb_001817_030 Hb_003436_030 Hb_003436_030 Hb_001817_030--Hb_003436_030 Hb_012586_030 Hb_012586_030 Hb_001817_030--Hb_012586_030 Hb_177179_010 Hb_177179_010 Hb_001817_030--Hb_177179_010 Hb_035687_010 Hb_035687_010 Hb_001817_030--Hb_035687_010 Hb_002289_130 Hb_002289_130 Hb_001817_030--Hb_002289_130 Hb_046054_010 Hb_046054_010 Hb_001817_030--Hb_046054_010 Hb_138585_020 Hb_138585_020 Hb_003436_030--Hb_138585_020 Hb_033623_040 Hb_033623_040 Hb_003436_030--Hb_033623_040 Hb_000101_150 Hb_000101_150 Hb_003436_030--Hb_000101_150 Hb_010736_030 Hb_010736_030 Hb_003436_030--Hb_010736_030 Hb_078780_010 Hb_078780_010 Hb_003436_030--Hb_078780_010 Hb_000010_100 Hb_000010_100 Hb_012586_030--Hb_000010_100 Hb_006355_050 Hb_006355_050 Hb_012586_030--Hb_006355_050 Hb_001342_050 Hb_001342_050 Hb_012586_030--Hb_001342_050 Hb_007177_010 Hb_007177_010 Hb_012586_030--Hb_007177_010 Hb_061637_010 Hb_061637_010 Hb_012586_030--Hb_061637_010 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_002513_030 Hb_002513_030 Hb_177179_010--Hb_002513_030 Hb_001242_090 Hb_001242_090 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_001221_370 Hb_001221_370 Hb_035687_010--Hb_001221_370 Hb_004212_040 Hb_004212_040 Hb_035687_010--Hb_004212_040 Hb_000205_340 Hb_000205_340 Hb_035687_010--Hb_000205_340 Hb_002571_090 Hb_002571_090 Hb_035687_010--Hb_002571_090 Hb_003206_080 Hb_003206_080 Hb_035687_010--Hb_003206_080 Hb_143874_010 Hb_143874_010 Hb_035687_010--Hb_143874_010 Hb_000161_020 Hb_000161_020 Hb_002289_130--Hb_000161_020 Hb_002289_130--Hb_001545_210 Hb_002289_130--Hb_001242_090 Hb_002289_130--Hb_177179_010 Hb_001135_280 Hb_001135_280 Hb_002289_130--Hb_001135_280 Hb_003688_170 Hb_003688_170 Hb_002289_130--Hb_003688_170 Hb_046054_010--Hb_035687_010 Hb_001106_050 Hb_001106_050 Hb_046054_010--Hb_001106_050 Hb_000094_040 Hb_000094_040 Hb_046054_010--Hb_000094_040 Hb_170156_010 Hb_170156_010 Hb_046054_010--Hb_170156_010 Hb_046054_010--Hb_003206_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0225696 0.0226488 0.0357636 0 0.0905733 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.373858 0.0163603 0.083096

CAGE analysis