Hb_012586_030

Information

Type -
Description -
Location Contig12586: 20073-22494
Sequence    

Annotation

kegg
ID cic:CICLE_v10014868mg
description hypothetical protein
nr
ID XP_006448423.1
description hypothetical protein CICLE_v10014868mg [Citrus clementina]
swissprot
ID Q9FID6
description Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1
trembl
ID V4TMI4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014868mg PE=3 SV=1
Gene Ontology
ID GO:0000166
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012586_030 0.0 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
2 Hb_000010_100 0.246123212 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
3 Hb_006355_050 0.2987979056 - - -
4 Hb_001817_030 0.3029684868 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_001342_050 0.3030711345 - - -
6 Hb_007177_010 0.3033452524 - - -
7 Hb_061637_010 0.3036996394 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_000964_060 0.3089386151 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
9 Hb_000427_120 0.3133940487 - - -
10 Hb_000083_040 0.3155194473 - - conserved hypothetical protein [Ricinus communis]
11 Hb_074238_010 0.3165797562 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
12 Hb_004680_030 0.3179969512 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
13 Hb_000184_200 0.320367854 - - -
14 Hb_010435_020 0.3223132711 - - PREDICTED: uncharacterized protein LOC104216897 [Nicotiana sylvestris]
15 Hb_023732_040 0.3250602681 - - cytochrome P450, putative [Ricinus communis]
16 Hb_052983_010 0.3251740104 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_005020_010 0.3271475213 - - -
18 Hb_024247_020 0.3313372355 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
19 Hb_000226_100 0.334675387 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_000141_240 0.3359225745 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012586_030 Hb_012586_030 Hb_000010_100 Hb_000010_100 Hb_012586_030--Hb_000010_100 Hb_006355_050 Hb_006355_050 Hb_012586_030--Hb_006355_050 Hb_001817_030 Hb_001817_030 Hb_012586_030--Hb_001817_030 Hb_001342_050 Hb_001342_050 Hb_012586_030--Hb_001342_050 Hb_007177_010 Hb_007177_010 Hb_012586_030--Hb_007177_010 Hb_061637_010 Hb_061637_010 Hb_012586_030--Hb_061637_010 Hb_026048_060 Hb_026048_060 Hb_000010_100--Hb_026048_060 Hb_001143_260 Hb_001143_260 Hb_000010_100--Hb_001143_260 Hb_002513_050 Hb_002513_050 Hb_000010_100--Hb_002513_050 Hb_000184_200 Hb_000184_200 Hb_000010_100--Hb_000184_200 Hb_003799_020 Hb_003799_020 Hb_000010_100--Hb_003799_020 Hb_000083_040 Hb_000083_040 Hb_006355_050--Hb_000083_040 Hb_000705_280 Hb_000705_280 Hb_006355_050--Hb_000705_280 Hb_006355_050--Hb_007177_010 Hb_000638_040 Hb_000638_040 Hb_006355_050--Hb_000638_040 Hb_006355_050--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_006355_050--Hb_021156_030 Hb_003436_030 Hb_003436_030 Hb_001817_030--Hb_003436_030 Hb_177179_010 Hb_177179_010 Hb_001817_030--Hb_177179_010 Hb_035687_010 Hb_035687_010 Hb_001817_030--Hb_035687_010 Hb_002289_130 Hb_002289_130 Hb_001817_030--Hb_002289_130 Hb_046054_010 Hb_046054_010 Hb_001817_030--Hb_046054_010 Hb_171065_010 Hb_171065_010 Hb_001342_050--Hb_171065_010 Hb_001342_050--Hb_001143_260 Hb_001789_170 Hb_001789_170 Hb_001342_050--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_001342_050--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_001342_050--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001342_050--Hb_011356_020 Hb_005020_010 Hb_005020_010 Hb_007177_010--Hb_005020_010 Hb_000572_050 Hb_000572_050 Hb_007177_010--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_007177_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_007177_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_007177_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_007177_010--Hb_001545_250 Hb_061637_010--Hb_007177_010 Hb_061637_010--Hb_000572_050 Hb_005841_030 Hb_005841_030 Hb_061637_010--Hb_005841_030 Hb_005142_010 Hb_005142_010 Hb_061637_010--Hb_005142_010 Hb_061637_010--Hb_001403_030 Hb_061637_010--Hb_000971_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155283 0.177914 0.149636 0 0.187691 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0231816 2.39996 0.0739755 0

CAGE analysis