Hb_003436_030

Information

Type -
Description -
Location Contig3436: 41799-47739
Sequence    

Annotation

kegg
ID rcu:RCOM_1248790
description plant origin recognition complex subunit, putative
nr
ID XP_002527745.1
description plant origin recognition complex subunit, putative [Ricinus communis]
swissprot
ID Q38899
description Origin of replication complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1
trembl
ID B9SP26
description Plant origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_1248790 PE=4 SV=1
Gene Ontology
ID GO:0000808
description origin recognition complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003436_030 0.0 - - plant origin recognition complex subunit, putative [Ricinus communis]
2 Hb_001817_030 0.2309037187 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
3 Hb_138585_020 0.2933431739 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033623_040 0.3203534971 - - JHL22C18.10 [Jatropha curcas]
5 Hb_000101_150 0.3277239045 - - -
6 Hb_010736_030 0.3478325071 - - -
7 Hb_078780_010 0.3493960766 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_022132_020 0.3525991316 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
9 Hb_002493_010 0.3586700833 - - -
10 Hb_076795_010 0.3608306883 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
11 Hb_170156_010 0.362216262 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001369_430 0.3727635449 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
13 Hb_028998_010 0.3729734994 - - -
14 Hb_000110_110 0.3733710852 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_089844_010 0.3734688405 - - -
16 Hb_026405_010 0.3735396347 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
17 Hb_009577_010 0.3735551012 - - -
18 Hb_001168_090 0.373630693 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
19 Hb_181107_010 0.3737303139 - - hypothetical protein, partial [Pseudomonas tolaasii]
20 Hb_000029_430 0.3738312975 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003436_030 Hb_003436_030 Hb_001817_030 Hb_001817_030 Hb_003436_030--Hb_001817_030 Hb_138585_020 Hb_138585_020 Hb_003436_030--Hb_138585_020 Hb_033623_040 Hb_033623_040 Hb_003436_030--Hb_033623_040 Hb_000101_150 Hb_000101_150 Hb_003436_030--Hb_000101_150 Hb_010736_030 Hb_010736_030 Hb_003436_030--Hb_010736_030 Hb_078780_010 Hb_078780_010 Hb_003436_030--Hb_078780_010 Hb_012586_030 Hb_012586_030 Hb_001817_030--Hb_012586_030 Hb_177179_010 Hb_177179_010 Hb_001817_030--Hb_177179_010 Hb_035687_010 Hb_035687_010 Hb_001817_030--Hb_035687_010 Hb_002289_130 Hb_002289_130 Hb_001817_030--Hb_002289_130 Hb_046054_010 Hb_046054_010 Hb_001817_030--Hb_046054_010 Hb_076795_010 Hb_076795_010 Hb_138585_020--Hb_076795_010 Hb_088410_010 Hb_088410_010 Hb_138585_020--Hb_088410_010 Hb_172388_010 Hb_172388_010 Hb_138585_020--Hb_172388_010 Hb_002122_020 Hb_002122_020 Hb_138585_020--Hb_002122_020 Hb_002493_010 Hb_002493_010 Hb_138585_020--Hb_002493_010 Hb_033623_040--Hb_002493_010 Hb_033623_040--Hb_002122_020 Hb_017184_010 Hb_017184_010 Hb_033623_040--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_033623_040--Hb_001952_080 Hb_004989_010 Hb_004989_010 Hb_033623_040--Hb_004989_010 Hb_039316_010 Hb_039316_010 Hb_033623_040--Hb_039316_010 Hb_008730_010 Hb_008730_010 Hb_000101_150--Hb_008730_010 Hb_170156_010 Hb_170156_010 Hb_000101_150--Hb_170156_010 Hb_000101_150--Hb_076795_010 Hb_043708_010 Hb_043708_010 Hb_000101_150--Hb_043708_010 Hb_000031_350 Hb_000031_350 Hb_000101_150--Hb_000031_350 Hb_022132_020 Hb_022132_020 Hb_000101_150--Hb_022132_020 Hb_001369_430 Hb_001369_430 Hb_010736_030--Hb_001369_430 Hb_028998_010 Hb_028998_010 Hb_010736_030--Hb_028998_010 Hb_000110_110 Hb_000110_110 Hb_010736_030--Hb_000110_110 Hb_089844_010 Hb_089844_010 Hb_010736_030--Hb_089844_010 Hb_026405_010 Hb_026405_010 Hb_010736_030--Hb_026405_010 Hb_009577_010 Hb_009577_010 Hb_010736_030--Hb_009577_010 Hb_009393_070 Hb_009393_070 Hb_078780_010--Hb_009393_070 Hb_078780_010--Hb_022132_020 Hb_141425_010 Hb_141425_010 Hb_078780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_078780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_078780_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_078780_010--Hb_009268_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.060402 0 0.0964 0 0.174612 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.748889 0 0.412963

CAGE analysis