Hb_009393_070

Information

Type -
Description -
Location Contig9393: 33603-38193
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14515g
description hypothetical protein
nr
ID XP_011012645.1
description PREDICTED: uncharacterized protein At2g29880-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5G7M7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14515g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63047: 31606-46485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_070 0.0 - - PREDICTED: uncharacterized protein At2g29880-like [Populus euphratica]
2 Hb_078780_010 0.07768582 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_009268_030 0.2531651961 - - ribosomal protein S7 [Piper cenocladum]
4 Hb_170973_010 0.2531654505 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
5 Hb_141425_010 0.2634135366 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
6 Hb_000987_110 0.2639170233 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
7 Hb_123396_010 0.2652943306 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
8 Hb_004124_010 0.2785951232 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_001124_170 0.2913726322 - - putative retrotransposon protein [Phyllostachys edulis]
10 Hb_006933_010 0.2915795475 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002495_050 0.2920752018 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
12 Hb_012305_110 0.3102839779 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
13 Hb_022132_020 0.312769398 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
14 Hb_000159_020 0.3150099562 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
15 Hb_021374_020 0.318504595 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
16 Hb_154997_010 0.3201580538 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
17 Hb_004078_030 0.3280969102 - - Putative polyprotein, identical [Solanum demissum]
18 Hb_004019_060 0.3281098621 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_008601_020 0.3281135564 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_004989_010 0.3281443951 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_009393_070 Hb_009393_070 Hb_078780_010 Hb_078780_010 Hb_009393_070--Hb_078780_010 Hb_009268_030 Hb_009268_030 Hb_009393_070--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_009393_070--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_009393_070--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_009393_070--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_009393_070--Hb_123396_010 Hb_022132_020 Hb_022132_020 Hb_078780_010--Hb_022132_020 Hb_078780_010--Hb_141425_010 Hb_078780_010--Hb_000987_110 Hb_078780_010--Hb_123396_010 Hb_078780_010--Hb_009268_030 Hb_009268_030--Hb_170973_010 Hb_009268_030--Hb_141425_010 Hb_009268_030--Hb_000987_110 Hb_009268_030--Hb_123396_010 Hb_004124_010 Hb_004124_010 Hb_009268_030--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_009268_030--Hb_001124_170 Hb_170973_010--Hb_141425_010 Hb_170973_010--Hb_000987_110 Hb_170973_010--Hb_123396_010 Hb_170973_010--Hb_004124_010 Hb_170973_010--Hb_001124_170 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.073398 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.121699 0 0.404449

CAGE analysis