Hb_002513_050

Information

Type -
Description -
Location Contig2513: 31135-33313
Sequence    

Annotation

kegg
ID -
description -
nr
ID KHG11388.1
description hypothetical protein F383_14794 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NA40
description Uncharacterized protein OS=Gossypium arboreum GN=F383_14794 PE=4 SV=1
Gene Ontology
ID GO:0003824
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002513_050 0.0 - - hypothetical protein F383_14794 [Gossypium arboreum]
2 Hb_000184_200 0.1024420996 - - -
3 Hb_000876_040 0.1208288749 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
4 Hb_004785_010 0.157597082 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000174_190 0.1584851446 - - unnamed protein product [Coffea canephora]
6 Hb_076908_010 0.1586514918 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_083493_050 0.1587733601 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_149358_010 0.1591032414 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_001110_020 0.1596634294 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
10 Hb_139388_010 0.1597995197 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
11 Hb_000351_030 0.1598815696 - - putative NBS-LRR type disease resistance protein [Prunus persica]
12 Hb_012286_070 0.1602313944 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
13 Hb_000450_140 0.1602580377 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
14 Hb_181535_010 0.1605151583 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_030928_010 0.1607072483 - - -
16 Hb_020818_010 0.1609279522 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
17 Hb_070247_010 0.1613868048 - - hypothetical protein [Pseudomonas tolaasii]
18 Hb_090826_010 0.1620816513 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
19 Hb_010760_010 0.1631569869 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_022206_060 0.1634604007 - - -

Gene co-expression network

sample Hb_002513_050 Hb_002513_050 Hb_000184_200 Hb_000184_200 Hb_002513_050--Hb_000184_200 Hb_000876_040 Hb_000876_040 Hb_002513_050--Hb_000876_040 Hb_004785_010 Hb_004785_010 Hb_002513_050--Hb_004785_010 Hb_000174_190 Hb_000174_190 Hb_002513_050--Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_002513_050--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_002513_050--Hb_083493_050 Hb_000201_020 Hb_000201_020 Hb_000184_200--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_000184_200--Hb_000971_060 Hb_001545_250 Hb_001545_250 Hb_000184_200--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000184_200--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000184_200--Hb_010760_010 Hb_168311_010 Hb_168311_010 Hb_000876_040--Hb_168311_010 Hb_125847_010 Hb_125847_010 Hb_000876_040--Hb_125847_010 Hb_001143_260 Hb_001143_260 Hb_000876_040--Hb_001143_260 Hb_000139_440 Hb_000139_440 Hb_000876_040--Hb_000139_440 Hb_000430_010 Hb_000430_010 Hb_000876_040--Hb_000430_010 Hb_004785_010--Hb_000174_190 Hb_004785_010--Hb_076908_010 Hb_004785_010--Hb_083493_050 Hb_149358_010 Hb_149358_010 Hb_004785_010--Hb_149358_010 Hb_001110_020 Hb_001110_020 Hb_004785_010--Hb_001110_020 Hb_139388_010 Hb_139388_010 Hb_004785_010--Hb_139388_010 Hb_000174_190--Hb_076908_010 Hb_000174_190--Hb_083493_050 Hb_000174_190--Hb_149358_010 Hb_000174_190--Hb_001110_020 Hb_000174_190--Hb_139388_010 Hb_076908_010--Hb_083493_050 Hb_076908_010--Hb_149358_010 Hb_076908_010--Hb_001110_020 Hb_076908_010--Hb_139388_010 Hb_083493_050--Hb_149358_010 Hb_083493_050--Hb_001110_020 Hb_083493_050--Hb_139388_010 Hb_000351_030 Hb_000351_030 Hb_083493_050--Hb_000351_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0205163 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.358519 0.0597613 0

CAGE analysis