Hb_001143_260

Information

Type -
Description -
Location Contig1143: 243799-255383
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08090g
description hypothetical protein
nr
ID XP_011003423.1
description PREDICTED: metal transporter Nramp5-like [Populus euphratica]
swissprot
ID Q8H4H5
description Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1
trembl
ID A0A067K9Q1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12124 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_260 0.0 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
2 Hb_043623_020 0.0839114657 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
3 Hb_002513_050 0.1641632416 - - hypothetical protein F383_14794 [Gossypium arboreum]
4 Hb_000876_040 0.1703713439 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
5 Hb_001221_280 0.2072438986 - - -
6 Hb_000184_200 0.208492365 - - -
7 Hb_009615_080 0.2656321485 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
8 Hb_002498_130 0.2763255755 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
9 Hb_000781_050 0.2764719055 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001342_050 0.2770748478 - - -
11 Hb_011356_020 0.2776785239 - - -
12 Hb_001789_170 0.2779651487 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
13 Hb_000010_100 0.2853343265 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
14 Hb_000392_290 0.2855241711 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_004785_010 0.2907578068 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000174_190 0.2907714677 - - unnamed protein product [Coffea canephora]
17 Hb_076908_010 0.2907793863 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_083493_050 0.2907861216 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
19 Hb_149358_010 0.2908080681 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001110_020 0.2908566017 - - hypothetical protein JCGZ_03693 [Jatropha curcas]

Gene co-expression network

sample Hb_001143_260 Hb_001143_260 Hb_043623_020 Hb_043623_020 Hb_001143_260--Hb_043623_020 Hb_002513_050 Hb_002513_050 Hb_001143_260--Hb_002513_050 Hb_000876_040 Hb_000876_040 Hb_001143_260--Hb_000876_040 Hb_001221_280 Hb_001221_280 Hb_001143_260--Hb_001221_280 Hb_000184_200 Hb_000184_200 Hb_001143_260--Hb_000184_200 Hb_009615_080 Hb_009615_080 Hb_001143_260--Hb_009615_080 Hb_043623_020--Hb_001221_280 Hb_043623_020--Hb_000876_040 Hb_043623_020--Hb_002513_050 Hb_043623_020--Hb_009615_080 Hb_043623_020--Hb_000184_200 Hb_002513_050--Hb_000184_200 Hb_002513_050--Hb_000876_040 Hb_004785_010 Hb_004785_010 Hb_002513_050--Hb_004785_010 Hb_000174_190 Hb_000174_190 Hb_002513_050--Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_002513_050--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_002513_050--Hb_083493_050 Hb_168311_010 Hb_168311_010 Hb_000876_040--Hb_168311_010 Hb_125847_010 Hb_125847_010 Hb_000876_040--Hb_125847_010 Hb_000139_440 Hb_000139_440 Hb_000876_040--Hb_000139_440 Hb_000430_010 Hb_000430_010 Hb_000876_040--Hb_000430_010 Hb_003799_020 Hb_003799_020 Hb_001221_280--Hb_003799_020 Hb_098785_010 Hb_098785_010 Hb_001221_280--Hb_098785_010 Hb_006569_070 Hb_006569_070 Hb_001221_280--Hb_006569_070 Hb_000856_160 Hb_000856_160 Hb_001221_280--Hb_000856_160 Hb_000201_020 Hb_000201_020 Hb_000184_200--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_000184_200--Hb_000971_060 Hb_001545_250 Hb_001545_250 Hb_000184_200--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000184_200--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000184_200--Hb_010760_010 Hb_025311_020 Hb_025311_020 Hb_009615_080--Hb_025311_020 Hb_009615_080--Hb_000876_040 Hb_007125_010 Hb_007125_010 Hb_009615_080--Hb_007125_010 Hb_012424_010 Hb_012424_010 Hb_009615_080--Hb_012424_010 Hb_187513_010 Hb_187513_010 Hb_009615_080--Hb_187513_010 Hb_009615_080--Hb_002513_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00529951 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.023187 0.00481404 0

CAGE analysis