Hb_006569_070

Information

Type -
Description -
Location Contig6569: 84504-85317
Sequence    

Annotation

kegg
ID rcu:RCOM_0220230
description nucleic acid binding protein, putative
nr
ID XP_002524436.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEL7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0220230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_070 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_098785_010 0.233480618 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_001221_280 0.2818275138 - - -
4 Hb_000011_090 0.3087396858 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
5 Hb_007012_070 0.3162592514 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
6 Hb_003581_190 0.3405694991 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
7 Hb_010515_030 0.3520971103 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
8 Hb_000856_160 0.3556056334 - - -
9 Hb_000125_220 0.3663806804 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
10 Hb_003799_020 0.3690409951 - - hypothetical protein VITISV_003261 [Vitis vinifera]
11 Hb_002382_020 0.3724951277 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
12 Hb_043623_020 0.374831533 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
13 Hb_001221_270 0.3927360699 - - -
14 Hb_000085_390 0.3958535056 - - unnamed protein product [Vitis vinifera]
15 Hb_001008_140 0.3972264393 - - -
16 Hb_003659_020 0.4067864602 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_001143_260 0.4083593373 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
18 Hb_008035_050 0.4092195254 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_139691_010 0.4140458357 - - -
20 Hb_000302_210 0.414141724 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006569_070 Hb_006569_070 Hb_098785_010 Hb_098785_010 Hb_006569_070--Hb_098785_010 Hb_001221_280 Hb_001221_280 Hb_006569_070--Hb_001221_280 Hb_000011_090 Hb_000011_090 Hb_006569_070--Hb_000011_090 Hb_007012_070 Hb_007012_070 Hb_006569_070--Hb_007012_070 Hb_003581_190 Hb_003581_190 Hb_006569_070--Hb_003581_190 Hb_010515_030 Hb_010515_030 Hb_006569_070--Hb_010515_030 Hb_000125_220 Hb_000125_220 Hb_098785_010--Hb_000125_220 Hb_000302_210 Hb_000302_210 Hb_098785_010--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_098785_010--Hb_000985_070 Hb_003799_020 Hb_003799_020 Hb_098785_010--Hb_003799_020 Hb_098785_010--Hb_001221_280 Hb_043623_020 Hb_043623_020 Hb_001221_280--Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_001221_280--Hb_001143_260 Hb_001221_280--Hb_003799_020 Hb_000856_160 Hb_000856_160 Hb_001221_280--Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_000011_090--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_000011_090--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000011_090--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000011_090--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000011_090--Hb_001789_170 Hb_007012_070--Hb_098785_010 Hb_004970_210 Hb_004970_210 Hb_007012_070--Hb_004970_210 Hb_078897_010 Hb_078897_010 Hb_007012_070--Hb_078897_010 Hb_004453_100 Hb_004453_100 Hb_007012_070--Hb_004453_100 Hb_001711_050 Hb_001711_050 Hb_007012_070--Hb_001711_050 Hb_171065_010 Hb_171065_010 Hb_003581_190--Hb_171065_010 Hb_001342_050 Hb_001342_050 Hb_003581_190--Hb_001342_050 Hb_001837_020 Hb_001837_020 Hb_003581_190--Hb_001837_020 Hb_008370_010 Hb_008370_010 Hb_003581_190--Hb_008370_010 Hb_004881_100 Hb_004881_100 Hb_003581_190--Hb_004881_100 Hb_079751_010 Hb_079751_010 Hb_010515_030--Hb_079751_010 Hb_010515_030--Hb_001221_280 Hb_002157_200 Hb_002157_200 Hb_010515_030--Hb_002157_200 Hb_010515_030--Hb_000856_160 Hb_000215_370 Hb_000215_370 Hb_010515_030--Hb_000215_370 Hb_005656_030 Hb_005656_030 Hb_010515_030--Hb_005656_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.640109 0 0 0.163624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.446311 0.148503 0

CAGE analysis