Hb_001837_020

Information

Type -
Description -
Location Contig1837: 32737-41589
Sequence    

Annotation

kegg
ID rcu:RCOM_0777680
description aldo-keto reductase, putative (EC:2.3.1.170)
nr
ID XP_011022107.1
description PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X4 [Populus euphratica]
swissprot
ID Q9SQ64
description Non-functional NADPH-dependent codeinone reductase 2 OS=Papaver somniferum GN=COR2 PE=1 SV=1
trembl
ID A0A0D2SAW3
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G043800 PE=4 SV=1
Gene Ontology
ID GO:0016491
description non-functional nadph-dependent codeinone reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001837_020 0.0 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X4 [Populus euphratica]
2 Hb_000186_340 0.2491330422 - - hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
3 Hb_003581_190 0.3348374293 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
4 Hb_002644_030 0.3798282646 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
5 Hb_000340_340 0.3812976382 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
6 Hb_002374_430 0.3853502386 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002025_310 0.390151502 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_001946_270 0.3931468467 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
9 Hb_004157_120 0.395213436 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
10 Hb_067188_010 0.3999456916 - - -
11 Hb_001238_050 0.4003356273 - - -
12 Hb_149539_010 0.4031701287 - - -
13 Hb_003475_010 0.4041629974 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
14 Hb_012180_020 0.4052796809 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
15 Hb_001512_020 0.4073774283 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
16 Hb_000413_140 0.4085753795 - - transcription factor, putative [Ricinus communis]
17 Hb_034482_020 0.4106027941 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
18 Hb_007218_070 0.4132060926 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000317_300 0.4137296752 - - -
20 Hb_004306_070 0.4145602021 - - hypothetical protein 0_18789_01, partial [Pinus taeda]

Gene co-expression network

sample Hb_001837_020 Hb_001837_020 Hb_000186_340 Hb_000186_340 Hb_001837_020--Hb_000186_340 Hb_003581_190 Hb_003581_190 Hb_001837_020--Hb_003581_190 Hb_002644_030 Hb_002644_030 Hb_001837_020--Hb_002644_030 Hb_000340_340 Hb_000340_340 Hb_001837_020--Hb_000340_340 Hb_002374_430 Hb_002374_430 Hb_001837_020--Hb_002374_430 Hb_002025_310 Hb_002025_310 Hb_001837_020--Hb_002025_310 Hb_004157_120 Hb_004157_120 Hb_000186_340--Hb_004157_120 Hb_081504_010 Hb_081504_010 Hb_000186_340--Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_000186_340--Hb_000997_330 Hb_008643_110 Hb_008643_110 Hb_000186_340--Hb_008643_110 Hb_007218_070 Hb_007218_070 Hb_000186_340--Hb_007218_070 Hb_171065_010 Hb_171065_010 Hb_003581_190--Hb_171065_010 Hb_001342_050 Hb_001342_050 Hb_003581_190--Hb_001342_050 Hb_008370_010 Hb_008370_010 Hb_003581_190--Hb_008370_010 Hb_006569_070 Hb_006569_070 Hb_003581_190--Hb_006569_070 Hb_004881_100 Hb_004881_100 Hb_003581_190--Hb_004881_100 Hb_001506_010 Hb_001506_010 Hb_002644_030--Hb_001506_010 Hb_000331_150 Hb_000331_150 Hb_002644_030--Hb_000331_150 Hb_000115_300 Hb_000115_300 Hb_002644_030--Hb_000115_300 Hb_002644_030--Hb_004881_100 Hb_000504_080 Hb_000504_080 Hb_002644_030--Hb_000504_080 Hb_067188_010 Hb_067188_010 Hb_002644_030--Hb_067188_010 Hb_000340_340--Hb_004157_120 Hb_000567_160 Hb_000567_160 Hb_000340_340--Hb_000567_160 Hb_123051_020 Hb_123051_020 Hb_000340_340--Hb_123051_020 Hb_001252_150 Hb_001252_150 Hb_000340_340--Hb_001252_150 Hb_002890_250 Hb_002890_250 Hb_000340_340--Hb_002890_250 Hb_019153_040 Hb_019153_040 Hb_000340_340--Hb_019153_040 Hb_002131_040 Hb_002131_040 Hb_002374_430--Hb_002131_040 Hb_008725_150 Hb_008725_150 Hb_002374_430--Hb_008725_150 Hb_004137_070 Hb_004137_070 Hb_002374_430--Hb_004137_070 Hb_099864_010 Hb_099864_010 Hb_002374_430--Hb_099864_010 Hb_015707_010 Hb_015707_010 Hb_002374_430--Hb_015707_010 Hb_000608_060 Hb_000608_060 Hb_002374_430--Hb_000608_060 Hb_001946_270 Hb_001946_270 Hb_002025_310--Hb_001946_270 Hb_055384_010 Hb_055384_010 Hb_002025_310--Hb_055384_010 Hb_001102_180 Hb_001102_180 Hb_002025_310--Hb_001102_180 Hb_002205_120 Hb_002205_120 Hb_002025_310--Hb_002205_120 Hb_028872_060 Hb_028872_060 Hb_002025_310--Hb_028872_060 Hb_003312_010 Hb_003312_010 Hb_002025_310--Hb_003312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.070183 0 0.0899854 0.026417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687405 0 0.0976442 0.0875511 0

CAGE analysis