Hb_000340_340

Information

Type -
Description -
Location Contig340: 283326-284488
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13260g
description POPTRDRAFT_572786; hypothetical protein
nr
ID XP_002321049.2
description hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
swissprot
ID Q6ZLA7
description Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1
trembl
ID B9IA00
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13260g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_340 0.0 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
2 Hb_004157_120 0.2316062971 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
3 Hb_000567_160 0.260799572 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
4 Hb_123051_020 0.2857383512 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
5 Hb_001252_150 0.2857768912 - - -
6 Hb_002890_250 0.2877165219 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
7 Hb_019153_040 0.2940133622 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_164732_010 0.3010428364 - - -
9 Hb_003209_020 0.3020277728 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
10 Hb_000988_040 0.3036287918 - - -
11 Hb_161072_020 0.3075406995 - - -
12 Hb_000997_330 0.3169230549 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
13 Hb_002489_010 0.3208911778 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
14 Hb_000832_230 0.3227797219 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
15 Hb_001364_040 0.3274261428 - - -
16 Hb_008376_010 0.3277891781 - - -
17 Hb_014549_020 0.3280308573 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
18 Hb_002045_130 0.3285391889 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
19 Hb_155123_010 0.3309399142 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_002818_100 0.3343504458 - - hypothetical protein JCGZ_14122 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_340 Hb_000340_340 Hb_004157_120 Hb_004157_120 Hb_000340_340--Hb_004157_120 Hb_000567_160 Hb_000567_160 Hb_000340_340--Hb_000567_160 Hb_123051_020 Hb_123051_020 Hb_000340_340--Hb_123051_020 Hb_001252_150 Hb_001252_150 Hb_000340_340--Hb_001252_150 Hb_002890_250 Hb_002890_250 Hb_000340_340--Hb_002890_250 Hb_019153_040 Hb_019153_040 Hb_000340_340--Hb_019153_040 Hb_081504_010 Hb_081504_010 Hb_004157_120--Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_004157_120--Hb_000997_330 Hb_161072_020 Hb_161072_020 Hb_004157_120--Hb_161072_020 Hb_001364_040 Hb_001364_040 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_164732_010 Hb_164732_010 Hb_000567_160--Hb_164732_010 Hb_000300_330 Hb_000300_330 Hb_000567_160--Hb_000300_330 Hb_000567_160--Hb_019153_040 Hb_006846_090 Hb_006846_090 Hb_000567_160--Hb_006846_090 Hb_043629_020 Hb_043629_020 Hb_000567_160--Hb_043629_020 Hb_002489_010 Hb_002489_010 Hb_123051_020--Hb_002489_010 Hb_001329_240 Hb_001329_240 Hb_123051_020--Hb_001329_240 Hb_000009_620 Hb_000009_620 Hb_123051_020--Hb_000009_620 Hb_024505_050 Hb_024505_050 Hb_123051_020--Hb_024505_050 Hb_004348_010 Hb_004348_010 Hb_123051_020--Hb_004348_010 Hb_155123_010 Hb_155123_010 Hb_123051_020--Hb_155123_010 Hb_002818_100 Hb_002818_100 Hb_001252_150--Hb_002818_100 Hb_001252_150--Hb_164732_010 Hb_002260_040 Hb_002260_040 Hb_001252_150--Hb_002260_040 Hb_004032_240 Hb_004032_240 Hb_001252_150--Hb_004032_240 Hb_001252_150--Hb_019153_040 Hb_004128_210 Hb_004128_210 Hb_001252_150--Hb_004128_210 Hb_000988_040 Hb_000988_040 Hb_002890_250--Hb_000988_040 Hb_001198_050 Hb_001198_050 Hb_002890_250--Hb_001198_050 Hb_000638_020 Hb_000638_020 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_000684_370 Hb_000684_370 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_019153_040--Hb_164732_010 Hb_002983_020 Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_019153_040--Hb_004032_240 Hb_009680_030 Hb_009680_030 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.153539 0.0321722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0.0493063 0.0896298 0.0796818 0

CAGE analysis