Hb_000300_330

Information

Type -
Description -
Location Contig300: 286941-287405
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_330 0.0 - - -
2 Hb_000300_340 0.136935957 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
3 Hb_164732_010 0.1529180436 - - -
4 Hb_000567_160 0.1879314657 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
5 Hb_019153_040 0.2167629749 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_009680_030 0.2491605225 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
7 Hb_002983_020 0.2643661182 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
8 Hb_003768_040 0.2665765152 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_006846_090 0.2724874026 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
10 Hb_002311_250 0.2767871778 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
11 Hb_001252_150 0.2922155733 - - -
12 Hb_010931_110 0.2928485289 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_002818_100 0.2990398186 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
14 Hb_010603_020 0.301764914 - - -
15 Hb_001198_050 0.3090325266 - - hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
16 Hb_004032_240 0.311838464 - - electron transporter, putative [Ricinus communis]
17 Hb_000331_150 0.3156871548 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_043629_020 0.3172515357 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
19 Hb_011457_160 0.3185420984 - - PREDICTED: BI1-like protein [Jatropha curcas]
20 Hb_006846_100 0.3190864878 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]

Gene co-expression network

sample Hb_000300_330 Hb_000300_330 Hb_000300_340 Hb_000300_340 Hb_000300_330--Hb_000300_340 Hb_164732_010 Hb_164732_010 Hb_000300_330--Hb_164732_010 Hb_000567_160 Hb_000567_160 Hb_000300_330--Hb_000567_160 Hb_019153_040 Hb_019153_040 Hb_000300_330--Hb_019153_040 Hb_009680_030 Hb_009680_030 Hb_000300_330--Hb_009680_030 Hb_002983_020 Hb_002983_020 Hb_000300_330--Hb_002983_020 Hb_000300_340--Hb_164732_010 Hb_000300_340--Hb_000567_160 Hb_000300_340--Hb_002983_020 Hb_003462_010 Hb_003462_010 Hb_000300_340--Hb_003462_010 Hb_000300_340--Hb_019153_040 Hb_164732_010--Hb_019153_040 Hb_164732_010--Hb_000567_160 Hb_164732_010--Hb_002983_020 Hb_164732_010--Hb_009680_030 Hb_006846_090 Hb_006846_090 Hb_164732_010--Hb_006846_090 Hb_000567_160--Hb_019153_040 Hb_000567_160--Hb_006846_090 Hb_000340_340 Hb_000340_340 Hb_000567_160--Hb_000340_340 Hb_043629_020 Hb_043629_020 Hb_000567_160--Hb_043629_020 Hb_019153_040--Hb_002983_020 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_009680_030--Hb_006846_090 Hb_009680_030--Hb_002983_020 Hb_002311_250 Hb_002311_250 Hb_009680_030--Hb_002311_250 Hb_009680_030--Hb_010931_110 Hb_000300_530 Hb_000300_530 Hb_009680_030--Hb_000300_530 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81768 0.637128 0 0 45.5928 2.20264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52121 2.34953 14.3991 2.99117 0

CAGE analysis