Hb_000300_340

Information

Type transcription factor
Description TF Family: SET
Location Contig300: 287503-288283
Sequence    

Annotation

kegg
ID pper:PRUPEppa1027128mg
description hypothetical protein
nr
ID CBI31239.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID M5VTZ1
description Histone-lysine N-methyltransferase OS=Prunus persica GN=PRUPE_ppa1027128mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_340 0.0 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
2 Hb_000300_330 0.136935957 - - -
3 Hb_164732_010 0.2281434954 - - -
4 Hb_000567_160 0.2738176213 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
5 Hb_002983_020 0.3036004159 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
6 Hb_003462_010 0.3082937839 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_019153_040 0.3087425493 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_009680_030 0.3108303542 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
9 Hb_003768_040 0.3122314644 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_141838_010 0.3330998631 - - -
11 Hb_043629_020 0.3343538517 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
12 Hb_002311_250 0.3405273844 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
13 Hb_006846_090 0.3410283615 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
14 Hb_010603_020 0.3422613056 - - -
15 Hb_000479_120 0.3434874672 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
16 Hb_004650_080 0.346317447 - - -
17 Hb_006846_100 0.3467887785 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
18 Hb_000424_160 0.3498430235 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
19 Hb_027751_050 0.350690418 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
20 Hb_007547_030 0.3510429618 - - vacuolar sorting receptor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000300_340 Hb_000300_340 Hb_000300_330 Hb_000300_330 Hb_000300_340--Hb_000300_330 Hb_164732_010 Hb_164732_010 Hb_000300_340--Hb_164732_010 Hb_000567_160 Hb_000567_160 Hb_000300_340--Hb_000567_160 Hb_002983_020 Hb_002983_020 Hb_000300_340--Hb_002983_020 Hb_003462_010 Hb_003462_010 Hb_000300_340--Hb_003462_010 Hb_019153_040 Hb_019153_040 Hb_000300_340--Hb_019153_040 Hb_000300_330--Hb_164732_010 Hb_000300_330--Hb_000567_160 Hb_000300_330--Hb_019153_040 Hb_009680_030 Hb_009680_030 Hb_000300_330--Hb_009680_030 Hb_000300_330--Hb_002983_020 Hb_164732_010--Hb_019153_040 Hb_164732_010--Hb_000567_160 Hb_164732_010--Hb_002983_020 Hb_164732_010--Hb_009680_030 Hb_006846_090 Hb_006846_090 Hb_164732_010--Hb_006846_090 Hb_000567_160--Hb_019153_040 Hb_000567_160--Hb_006846_090 Hb_000340_340 Hb_000340_340 Hb_000567_160--Hb_000340_340 Hb_043629_020 Hb_043629_020 Hb_000567_160--Hb_043629_020 Hb_002983_020--Hb_009680_030 Hb_002983_020--Hb_019153_040 Hb_000300_530 Hb_000300_530 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_010931_110 Hb_010931_110 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010 Hb_003462_010--Hb_043629_020 Hb_000115_170 Hb_000115_170 Hb_003462_010--Hb_000115_170 Hb_000345_120 Hb_000345_120 Hb_003462_010--Hb_000345_120 Hb_000227_420 Hb_000227_420 Hb_003462_010--Hb_000227_420 Hb_002232_200 Hb_002232_200 Hb_003462_010--Hb_002232_200 Hb_027751_050 Hb_027751_050 Hb_003462_010--Hb_027751_050 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_009680_030 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1492 0.343995 0 0 83.2681 2.19413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28887 1.89078 27.0776 1.04662 0

CAGE analysis