Hb_000567_160

Information

Type -
Description -
Location Contig567: 192232-193391
Sequence    

Annotation

kegg
ID rcu:RCOM_1015000
description copper ion binding protein, putative
nr
ID XP_012081652.1
description PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9S9A4
description Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_1015000 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_160 0.0 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
2 Hb_164732_010 0.1639041559 - - -
3 Hb_000300_330 0.1879314657 - - -
4 Hb_019153_040 0.2396295152 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
5 Hb_006846_090 0.2449178132 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
6 Hb_000340_340 0.260799572 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
7 Hb_043629_020 0.2681260922 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
8 Hb_002311_250 0.270745961 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
9 Hb_009680_030 0.2713248733 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
10 Hb_000300_340 0.2738176213 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_001252_150 0.2756494924 - - -
12 Hb_004348_010 0.2787118896 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
13 Hb_010603_020 0.2885630734 - - -
14 Hb_000227_420 0.2936521792 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
15 Hb_006846_100 0.298197882 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
16 Hb_003462_010 0.2986808014 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000331_150 0.3019531443 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002983_020 0.3077409091 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
19 Hb_000384_040 0.3085333484 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
20 Hb_000038_030 0.3102470333 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]

Gene co-expression network

sample Hb_000567_160 Hb_000567_160 Hb_164732_010 Hb_164732_010 Hb_000567_160--Hb_164732_010 Hb_000300_330 Hb_000300_330 Hb_000567_160--Hb_000300_330 Hb_019153_040 Hb_019153_040 Hb_000567_160--Hb_019153_040 Hb_006846_090 Hb_006846_090 Hb_000567_160--Hb_006846_090 Hb_000340_340 Hb_000340_340 Hb_000567_160--Hb_000340_340 Hb_043629_020 Hb_043629_020 Hb_000567_160--Hb_043629_020 Hb_164732_010--Hb_019153_040 Hb_164732_010--Hb_000300_330 Hb_002983_020 Hb_002983_020 Hb_164732_010--Hb_002983_020 Hb_009680_030 Hb_009680_030 Hb_164732_010--Hb_009680_030 Hb_164732_010--Hb_006846_090 Hb_000300_340 Hb_000300_340 Hb_000300_330--Hb_000300_340 Hb_000300_330--Hb_019153_040 Hb_000300_330--Hb_009680_030 Hb_000300_330--Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_006846_090--Hb_009680_030 Hb_006846_090--Hb_002983_020 Hb_002311_250 Hb_002311_250 Hb_006846_090--Hb_002311_250 Hb_000317_080 Hb_000317_080 Hb_006846_090--Hb_000317_080 Hb_029388_040 Hb_029388_040 Hb_006846_090--Hb_029388_040 Hb_004157_120 Hb_004157_120 Hb_000340_340--Hb_004157_120 Hb_123051_020 Hb_123051_020 Hb_000340_340--Hb_123051_020 Hb_001252_150 Hb_001252_150 Hb_000340_340--Hb_001252_150 Hb_002890_250 Hb_002890_250 Hb_000340_340--Hb_002890_250 Hb_000340_340--Hb_019153_040 Hb_000227_420 Hb_000227_420 Hb_043629_020--Hb_000227_420 Hb_000115_170 Hb_000115_170 Hb_043629_020--Hb_000115_170 Hb_003462_010 Hb_003462_010 Hb_043629_020--Hb_003462_010 Hb_003992_260 Hb_003992_260 Hb_043629_020--Hb_003992_260 Hb_005116_020 Hb_005116_020 Hb_043629_020--Hb_005116_020 Hb_002232_200 Hb_002232_200 Hb_043629_020--Hb_002232_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92347 1.41215 0.430519 1.2387 257.939 35.4914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6857 22.5776 61.6289 41.1891 0

CAGE analysis