Hb_001252_150

Information

Type -
Description -
Location Contig1252: 137420-144297
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_150 0.0 - - -
2 Hb_002818_100 0.2353714763 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
3 Hb_164732_010 0.2402644282 - - -
4 Hb_002260_040 0.2450497626 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
5 Hb_004032_240 0.2551203992 - - electron transporter, putative [Ricinus communis]
6 Hb_019153_040 0.255571238 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
7 Hb_004128_210 0.2641541846 - - PREDICTED: protein ALUMINUM SENSITIVE 3 [Jatropha curcas]
8 Hb_000567_160 0.2756494924 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
9 Hb_005298_030 0.2797940334 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
10 Hb_000340_340 0.2857768912 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
11 Hb_010603_020 0.2909861583 - - -
12 Hb_005496_060 0.291100011 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
13 Hb_006846_090 0.2914121855 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
14 Hb_000300_330 0.2922155733 - - -
15 Hb_004374_060 0.2924300816 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
16 Hb_003751_110 0.2974590103 - - unknown [Lotus japonicus]
17 Hb_004650_070 0.2989634562 - - -
18 Hb_002983_020 0.3008552933 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
19 Hb_000809_050 0.3010386459 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
20 Hb_002374_340 0.3080843553 - - Two-component response regulator ARR9, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_150 Hb_001252_150 Hb_002818_100 Hb_002818_100 Hb_001252_150--Hb_002818_100 Hb_164732_010 Hb_164732_010 Hb_001252_150--Hb_164732_010 Hb_002260_040 Hb_002260_040 Hb_001252_150--Hb_002260_040 Hb_004032_240 Hb_004032_240 Hb_001252_150--Hb_004032_240 Hb_019153_040 Hb_019153_040 Hb_001252_150--Hb_019153_040 Hb_004128_210 Hb_004128_210 Hb_001252_150--Hb_004128_210 Hb_002818_100--Hb_004032_240 Hb_002818_100--Hb_019153_040 Hb_143629_050 Hb_143629_050 Hb_002818_100--Hb_143629_050 Hb_000958_010 Hb_000958_010 Hb_002818_100--Hb_000958_010 Hb_002701_130 Hb_002701_130 Hb_002818_100--Hb_002701_130 Hb_010931_110 Hb_010931_110 Hb_002818_100--Hb_010931_110 Hb_164732_010--Hb_019153_040 Hb_000300_330 Hb_000300_330 Hb_164732_010--Hb_000300_330 Hb_000567_160 Hb_000567_160 Hb_164732_010--Hb_000567_160 Hb_002983_020 Hb_002983_020 Hb_164732_010--Hb_002983_020 Hb_009680_030 Hb_009680_030 Hb_164732_010--Hb_009680_030 Hb_006846_090 Hb_006846_090 Hb_164732_010--Hb_006846_090 Hb_000086_220 Hb_000086_220 Hb_002260_040--Hb_000086_220 Hb_001922_040 Hb_001922_040 Hb_002260_040--Hb_001922_040 Hb_000612_070 Hb_000612_070 Hb_002260_040--Hb_000612_070 Hb_002890_260 Hb_002890_260 Hb_002260_040--Hb_002890_260 Hb_005496_060 Hb_005496_060 Hb_002260_040--Hb_005496_060 Hb_004032_240--Hb_000958_010 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_008453_020 Hb_008453_020 Hb_004032_240--Hb_008453_020 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_019153_040--Hb_002983_020 Hb_019153_040--Hb_009680_030 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_081245_010 Hb_081245_010 Hb_004128_210--Hb_081245_010 Hb_004650_070 Hb_004650_070 Hb_004128_210--Hb_004650_070 Hb_000733_030 Hb_000733_030 Hb_004128_210--Hb_000733_030 Hb_000809_050 Hb_000809_050 Hb_004128_210--Hb_000809_050 Hb_001198_030 Hb_001198_030 Hb_004128_210--Hb_001198_030 Hb_005348_080 Hb_005348_080 Hb_004128_210--Hb_005348_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0799687 0 0 0 2.27482 0.508851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1356 0.445982 0.479794 0.126759 0

CAGE analysis