Hb_002260_040

Information

Type -
Description -
Location Contig2260: 32315-34972
Sequence    

Annotation

kegg
ID mdm:103401277
description putative ribonuclease H protein At1g65750
nr
ID XP_008338205.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5W5K8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020282mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_001252_150 0.2450497626 - - -
3 Hb_000086_220 0.2777143608 - - -
4 Hb_001922_040 0.2885100028 - - reticulon family protein [Populus trichocarpa]
5 Hb_000612_070 0.293775671 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002890_260 0.3104745866 - - -
7 Hb_005496_060 0.3190684372 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
8 Hb_000061_410 0.3288699748 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_005946_030 0.3326895684 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_001712_050 0.3328184646 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
11 Hb_157568_010 0.3328484029 - - MATE efflux family protein, putative [Theobroma cacao]
12 Hb_007317_220 0.3354403343 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
13 Hb_004650_020 0.3357041184 - - -
14 Hb_002374_340 0.3417474652 - - Two-component response regulator ARR9, putative [Ricinus communis]
15 Hb_000340_480 0.3419586249 - - -
16 Hb_001513_020 0.3432479931 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
17 Hb_001792_080 0.3448151472 - - unknown [Populus trichocarpa]
18 Hb_001252_160 0.3458172958 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
19 Hb_002835_190 0.3468390297 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_006846_090 0.3471032845 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]

Gene co-expression network

sample Hb_002260_040 Hb_002260_040 Hb_001252_150 Hb_001252_150 Hb_002260_040--Hb_001252_150 Hb_000086_220 Hb_000086_220 Hb_002260_040--Hb_000086_220 Hb_001922_040 Hb_001922_040 Hb_002260_040--Hb_001922_040 Hb_000612_070 Hb_000612_070 Hb_002260_040--Hb_000612_070 Hb_002890_260 Hb_002890_260 Hb_002260_040--Hb_002890_260 Hb_005496_060 Hb_005496_060 Hb_002260_040--Hb_005496_060 Hb_002818_100 Hb_002818_100 Hb_001252_150--Hb_002818_100 Hb_164732_010 Hb_164732_010 Hb_001252_150--Hb_164732_010 Hb_004032_240 Hb_004032_240 Hb_001252_150--Hb_004032_240 Hb_019153_040 Hb_019153_040 Hb_001252_150--Hb_019153_040 Hb_004128_210 Hb_004128_210 Hb_001252_150--Hb_004128_210 Hb_001252_160 Hb_001252_160 Hb_000086_220--Hb_001252_160 Hb_000061_410 Hb_000061_410 Hb_000086_220--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_000086_220--Hb_000155_070 Hb_005730_020 Hb_005730_020 Hb_000086_220--Hb_005730_020 Hb_003001_030 Hb_003001_030 Hb_000086_220--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_000086_220--Hb_004126_010 Hb_001922_040--Hb_000612_070 Hb_000463_050 Hb_000463_050 Hb_001922_040--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_001922_040--Hb_024505_030 Hb_002188_100 Hb_002188_100 Hb_001922_040--Hb_002188_100 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_000612_070--Hb_000340_480 Hb_004375_060 Hb_004375_060 Hb_000612_070--Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_000369_090 Hb_000369_090 Hb_002890_260--Hb_000369_090 Hb_000603_220 Hb_000603_220 Hb_002890_260--Hb_000603_220 Hb_002890_260--Hb_004025_030 Hb_000184_120 Hb_000184_120 Hb_002890_260--Hb_000184_120 Hb_043061_010 Hb_043061_010 Hb_002890_260--Hb_043061_010 Hb_033448_010 Hb_033448_010 Hb_002890_260--Hb_033448_010 Hb_002835_190 Hb_002835_190 Hb_005496_060--Hb_002835_190 Hb_006557_010 Hb_006557_010 Hb_005496_060--Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_005496_060--Hb_004657_010 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.420134 0.348987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.316146 0.0710481 0.131531 0 0

CAGE analysis